Basic information
Locus name	AT3G47780
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Nutrient recycling
Effect for Senescence	unclear
Gene Description	ABC transporter family protein transport protein ABC-C, Homo sapiens, PIR2:S71363
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85
Gene Ontology	molecular function ATP binding ATPase activity
Sequence	AT3G47780.1 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. D/L: ratio of DARK 5d/control. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
Ortholog Group
Ortholog Groups: OG5_126568	Accession Taxon NP_001031526 Arabidopsis thaliana NP_190357 Arabidopsis thaliana NP_190358 Arabidopsis thaliana NP_190359 Arabidopsis thaliana NP_190360 Arabidopsis thaliana NP_190361 Arabidopsis thaliana NP_190362 ( AT3G47780 ) Arabidopsis thaliana NP_190363 Arabidopsis thaliana NP_200977 Arabidopsis thaliana NP_200978 Arabidopsis thaliana NP_200981 Arabidopsis thaliana NP_200982 Arabidopsis thaliana NP_850354 Arabidopsis thaliana CMH235C Cyanidioschyzon merolae strain 10D CMJ039C Cyanidioschyzon merolae strain 10D CMR388C Cyanidioschyzon merolae strain 10D 121110 Chlamydomonas reinhardtii 129367 Chlamydomonas reinhardtii 81156 Chlamydomonas reinhardtii ACO61975 Micromonas sp. RCC299 ACO64068 Micromonas sp. RCC299 ACO69538 Micromonas sp. RCC299 NP_001046270 Oryza sativa Japonica Group NP_001057960 Oryza sativa Japonica Group NP_001061742 Oryza sativa Japonica Group NP_001061743 Oryza sativa Japonica Group NP_001062979 Oryza sativa Japonica Group estExt_gwp_GeneWisePlus.C_Chr_18.00010214 Ostreococcus tauri e_gw1.234.44.1 Physcomitrella patens subsp. patens e_gw1.266.44.1 Physcomitrella patens subsp. patens estExt_Genewise1.C_2180047 Physcomitrella patens subsp. patens estExt_fgenesh2_pg.C_1150035 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_1430029 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_1500070 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_460007 Physcomitrella patens subsp. patens fgenesh1_pg.scaffold_7011000001 Physcomitrella patens subsp. patens 30006.m000286 Ricinus communis 30147.m014092 Ricinus communis 30147.m014094 Ricinus communis 30147.m014095 Ricinus communis 33847.m000026 Ricinus communis gw1.20.85.1 Thalassiosira pseudonana CCMP1335 thaps1_ua_kg.chr_20000081 Thalassiosira pseudonana CCMP1335 XP_002945658 Volvox carteri f. nagariensis XP_002946480 Volvox carteri f. nagariensis XP_002950945 Volvox carteri f. nagariensis XP_002950946 Volvox carteri f. nagariensis XP_002953811 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR19229 0.0 1 932 IPR026082 ABC transporter A, ABCA Pfam PF12698 2.5E-14 257 512 No hit NA SUPERFAMILY SSF52540 6.3E-53 612 841 IPR027417 P-loop containing nucleoside triphosphate hydrolase ProSiteProfiles PS50893 19.5 613 850 IPR003439 ABC transporter-like SMART SM00382 3.3E-7 643 827 IPR003593 AAA+ ATPase domain Pfam PF00005 1.1E-16 658 779 IPR003439 ABC transporter-like ProSitePatterns PS00211 NA 752 766 IPR017871 ABC transporter, conserved site
Subcellular Localization
Localization	plasma membrane
Evidence	SUBAcon
Pubmed ID	23180787