Basic information
Locus name	AT2G45170
Alias	ATG8E
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Nutrient recycling:Autophagy
Effect for Senescence	delay
Gene Description	Autophagy gene 8e
Evidence	Molecular and physiologic evidence:GUS staining [Ref 1]
References	1: Slavikova S, Shy G, Yao Y, Glozman R, Levanony H, Pietrokovski S, Elazar Z, Galili G The autophagy-associated Atg8 gene family operates both under favourable growth conditions and under starvation stresses in Arabidopsis plants. J. Exp. Bot. 2005 Nov;56(421):2839-49
Sequence	AT2G45170.1 | Genomic | mRNA | CDS | Protein AT2G45170.2 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: AT2G45170.1  miRNA: ath-miR159a miRNA: ath-miR159a mfe: -25.0 kcal/mol  p-value: 0.017397  position:  474  target 5' C  U                U 3'             GG GCU UCUUCAAUCUAA              UC CGA GGAAGUUAGGUU   miRNA  3' A  U   G            U 5'  target: AT2G45170.1  miRNA: ath-miR159c miRNA: ath-miR159c mfe: -26.7 kcal/mol  p-value: 0.009190  position:  474  target 5' C  U                U 3'             GG GCU UCUUCAAUCUAA              CC CGA GGAAGUUAGGUU   miRNA  3' U  U   G            U 5'  target: AT2G45170.1  miRNA: ath-miR780 miRNA: ath-miR780 mfe: -23.7 kcal/mol  p-value: 0.009033  position:  399  target 5' A      A C           U 3'             AUGUCA G GUUUACGAGGA              UACGGU U UAAGUGCUUCU   miRNA  3'        C A           U 5'  target: AT2G45170.2  miRNA: ath-miR159a miRNA: ath-miR159a mfe: -25.0 kcal/mol  p-value: 0.018820  position:  542  target 5' C  U                U 3'             GG GCU UCUUCAAUCUAA              UC CGA GGAAGUUAGGUU   miRNA  3' A  U   G            U 5'  target: AT2G45170.2  miRNA: ath-miR159c miRNA: ath-miR159c mfe: -26.7 kcal/mol  p-value: 0.010083  position:  542  target 5' C  U                U 3'             GG GCU UCUUCAAUCUAA              CC CGA GGAAGUUAGGUU   miRNA  3' U  U   G            U 5'  target: AT2G45170.2  miRNA: ath-miR780 miRNA: ath-miR780 mfe: -23.7 kcal/mol  p-value: 0.009985  position:  467  target 5' A      A C           U 3'             AUGUCA G GUUUACGAGGA              UACGGU U UAAGUGCUUCU   miRNA  3'        C A           U 5'
Ortholog Group
Ortholog Groups: OG5_126969	Accession Taxon NP_001078424 Arabidopsis thaliana NP_001154497 Arabidopsis thaliana NP_176395 Arabidopsis thaliana NP_178631 Arabidopsis thaliana NP_182042 Arabidopsis thaliana NP_191623 Arabidopsis thaliana NP_192371 Arabidopsis thaliana NP_567504 Arabidopsis thaliana NP_567642 Arabidopsis thaliana NP_849298 Arabidopsis thaliana NP_849395 Arabidopsis thaliana NP_850431 ( AT2G45170 ) Arabidopsis thaliana 59275 Chlamydomonas reinhardtii ACO68142 Micromonas sp. RCC299 NP_001053929 Oryza sativa Japonica Group NP_001059767 Oryza sativa Japonica Group NP_001061171 Oryza sativa Japonica Group estExt_genewise1.C_Chr_01.00010658 Ostreococcus tauri estExt_Genewise1.C_2490044 Physcomitrella patens subsp. patens estExt_Genewise1.C_260093 Physcomitrella patens subsp. patens estExt_fgenesh1_pg.C_2090070 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_2090080 Physcomitrella patens subsp. patens gw1.209.48.1 Physcomitrella patens subsp. patens 29636.m000773 Ricinus communis 29842.m003584 Ricinus communis 30064.m000481 Ricinus communis 30064.m000482 Ricinus communis 30174.m008829 Ricinus communis e_gw1.2.784.1 Thalassiosira pseudonana CCMP1335 XP_002952089 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR10969 1.9E-81 1 120 IPR004241 Autophagy protein Atg8 ubiquitin-like SUPERFAMILY SSF54236 5.8E-43 5 118 No hit NA Pfam PF02991 3.2E-50 15 118 IPR004241 Autophagy protein Atg8 ubiquitin-like
Subcellular Localization
Localization 1 Localization cytosol Evidence SUBAcon Pubmed ID 23180787
Localization 2 Localization vacuole Evidence SUBAcon Pubmed ID 23180787