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| Locus name | AT1G31820 |
| Organism | Arabidopsis thaliana |
| Taxonomic identifier | [NCBI] |
| Function category | Nutrient recycling |
| Effect for Senescence | unclear |
| Gene Description | amino acid permease family protein weak similarity to asc-type amino acid transporter 2 [Mus musculus] GI:18148438; contains Pfam profile PF00324: Amino acid permease |
| Evidence | Genomic evidence:microarray data [Ref 1] |
| References | 1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJComparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.Plant J. 2005 May;42(4):567-85 |
| Gene Ontology | |
| Sequence | AT1G31820.1 | Genomic | mRNA | CDS | Protein
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| Sampling |
Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ.
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4) |
| Comparation |
Legends:
Col: wild type, indicates the ratio of expression in senescing leaves/green leaves.
NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type.
D/L: ratio of DARK 5d/control.
Genes showing at least 3 fold (ratio) up regulation during leaf senescence. |
miRNA Interaction  | |
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| Details | | target: AT1G31820.1
miRNA: ath-miR159a
miRNA: ath-miR159a
mfe: -27.0 kcal/mol
p-value: 0.020540
position: 189
target 5' A G G G 3'
GGAG UCCUUUCGGU CUGAA
UCUC AGGGAAGUUA GGUUU
miRNA 3' A G 5'
target: AT1G31820.1
miRNA: ath-miR159b
miRNA: ath-miR159b
mfe: -26.9 kcal/mol
p-value: 0.022614
position: 188
target 5' C G G G 3'
AGGAG UCCUUUCGGU CUGAA
UUCUC AGGGAAGUUA GGUUU
miRNA 3' G 5'
target: AT1G31820.1
miRNA: ath-miR159c
miRNA: ath-miR159c
mfe: -29.6 kcal/mol
p-value: 0.008035
position: 188
target 5' C G G G 3'
AGGAG UCCUUUCGGU CUGAA
UCCUC AGGGAAGUUA GGUUU
miRNA 3' G 5'
target: AT1G31820.1
miRNA: ath-miR319c
miRNA: ath-miR319c
mfe: -31.2 kcal/mol
p-value: 0.005852
position: 188
target 5' C G G A 3'
AGGAG UCCUUUCGGU CUGA
UCCUC AGGGAAGUCA GGUU
miRNA 3' U G 5'
target: AT1G31820.1
miRNA: ath-miR414
miRNA: ath-miR414
mfe: -30.7 kcal/mol
p-value: 0.000479
position: 84
target 5' C C U 3'
GAUGAUGAUGAUGG GAUG
CUGCUACUACUACU CUAC
miRNA 3' A U U 5'
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| Ortholog Group | |
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| Ortholog Groups: OG5_130748 | |
| Cross Link | |
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