|
|
| Locus name | AT2G47770 |
| Organism | Arabidopsis thaliana |
| Taxonomic identifier | [NCBI] |
| Function category | Nutrient recycling |
| Effect for Senescence | unclear |
| Gene Description | benzodiazepine receptor-related contains weak similarity to Peripheral-type benzodiazepine receptor (PBR) (PKBS) (Mitochondrial benzodiazepine receptor) (Swiss-Prot:P30536) [Homo sapiens] |
| Evidence | Genomic evidence:microarray data [Ref 1] |
| References | 1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJComparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.Plant J. 2005 May;42(4):567-85 |
| Gene Ontology | |
| Sequence | AT2G47770.1 | Genomic | mRNA | CDS | Protein
|
|
| Sampling |
Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ.
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4) |
| Comparation |
Legends:
Col: wild type, indicates the ratio of expression in senescing leaves/green leaves.
NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type.
D/L: ratio of DARK 5d/control.
CD: Cell Death, ratio of starved cell suspension culture/control.
Genes showing at least 3 fold (ratio) up regulation during leaf senescence. |
miRNA Interaction  | |
|
| Details | | target: AT2G47770.1
miRNA: ath-miR774
miRNA: ath-miR774
mfe: -25.8 kcal/mol
p-value: 0.007564
position: 551
target 5' C U U G U 3'
GUGGC UGUAUGGG UGAC G
UACCG GUAUACCC AUUG U
miRNA 3' C G U 5'
|
|
| Ortholog Group | |
|
| Ortholog Groups: OG5_129542 | |
| Cross Link | |
|
|
|
| Localization | endoplasmic reticulum,golgi |
| Evidence | SUBAcon |
| Pubmed ID | 23180787 |
