|
|
| Locus name | AT5G13750 |
| Organism | Arabidopsis thaliana |
| Taxonomic identifier | [NCBI] |
| Function category | Nutrient recycling |
| Effect for Senescence | unclear |
| Gene Description | transporter-related |
| Evidence | Genomic evidence:microarray data [Ref 1] |
| References | 1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJComparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.Plant J. 2005 May;42(4):567-85 |
| Gene Ontology | |
| Sequence | AT5G13750.1 | Genomic | mRNA | CDS | Protein
AT5G13750.2 | Genomic | mRNA | CDS | Protein
AT5G13750.3 | Genomic | mRNA | CDS | Protein
|
|
| Sampling |
Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ.
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4) |
| Comparation |
Legends:
Col: wild type, indicates the ratio of expression in senescing leaves/green leaves.
NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type.
D/L: ratio of DARK 5d/control.
CD: Cell Death, ratio of starved cell suspension culture/control.
Genes showing at least 3 fold (ratio) up regulation during leaf senescence. |
miRNA Interaction  | |
|
| Details | | target: AT5G13750.1
miRNA: ath-miR858
miRNA: ath-miR858
mfe: -24.7 kcal/mol
p-value: 0.044687
position: 181
target 5' C U A G 3'
AAGGUUGA CAGAUGA GAG
UUCCAGCU GUCUGUU CUU
miRNA 3' U G U 5'
target: AT5G13750.3
miRNA: ath-miR858
miRNA: ath-miR858
mfe: -24.7 kcal/mol
p-value: 0.044414
position: 181
target 5' C U A G 3'
AAGGUUGA CAGAUGA GAG
UUCCAGCU GUCUGUU CUU
miRNA 3' U G U 5'
|
|
| Ortholog Group | |
|
| Ortholog Groups: OG5_128462 | |
| Cross Link | |
|
|
