Basic information
Locus name	AT4G17550
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Nutrient recycling
Effect for Senescence	unclear
Gene Description	transporter-related similar to cAMP inducible 2 protein [Mus musculus] GI:4580997, glycerol 3-phosphate permease [Homo sapiens] GI:7543982; contains Pfam profile PF00083: major facilitator superfamily protein
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85
Gene Ontology	biological process transmembrane transport transport cellular component integral to membrane molecular function transporter activity
Sequence	AT4G17550.1 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. D/L: ratio of DARK 5d/control. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
miRNA Interaction
Details	target: AT4G17550.1  miRNA: ath-miR414 miRNA: ath-miR414 mfe: -24.4 kcal/mol  p-value: 0.013721  position:  1623  target 5' C   A  A           A  G 3'             GAU GA GAUGAUGGAGA GG              CUG CU CUACUACUUCU CU   miRNA  3' A      A           A    5'  target: AT4G17550.1  miRNA: ath-miR834 miRNA: ath-miR834 mfe: -34.4 kcal/mol  p-value: 0.000844  position:  1396  target 5' C    G                U 3'             UUGC ACUGUUACUGCUAUCA              AAUG UGGCGAUGACGAUGGU   miRNA  3'      G                  5'  target: AT4G17550.1  miRNA: ath-miR847 miRNA: ath-miR847 mfe: -26.5 kcal/mol  p-value: 0.020631  position:  830  target 5' U               A  U U   A 3'             UAUUAAGAGGAAGAG GA G UGA              GUAGUUCUUCUUCUC CU C ACU   miRNA  3'                            5'  target: AT4G17550.1  miRNA: ath-miR856 miRNA: ath-miR856 mfe: -23.8 kcal/mol  p-value: 0.004115  position:  471  target 5' U          U      U      U 3'             GUUG GGUUG UUGGUA GGGUUA              CGAC UCAAU AACCAU CCUAAU   miRNA  3'      U                     5'
Ortholog Group
Ortholog Groups: OG5_127818	Accession Taxon NP_174344 Arabidopsis thaliana NP_178954 Arabidopsis thaliana NP_193488 ( AT4G17550 ) Arabidopsis thaliana NP_194252 Arabidopsis thaliana NP_566891 Arabidopsis thaliana 144519 Chlamydomonas reinhardtii ACO66504 Micromonas sp. RCC299 ACO66931 Micromonas sp. RCC299 NP_001047601 Oryza sativa Japonica Group NP_001053515 Oryza sativa Japonica Group NP_001056973 Oryza sativa Japonica Group NP_001061024 Oryza sativa Japonica Group e_gw1.14.00.68.1 Ostreococcus tauri fgenesh1_pm.scaffold_18000016 Physcomitrella patens subsp. patens gw1.432.3.1 Physcomitrella patens subsp. patens 28193.m000305 Ricinus communis 29619.m000248 Ricinus communis 30147.m014220 Ricinus communis estExt_fgenesh1_pg.C_chr_50105 Thalassiosira pseudonana CCMP1335 XP_002947976 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR11662 8.6E-300 1 544 No hit NA PIRSF PIRSF002808 7.3E-135 1 534 IPR000849 Sugar phosphate transporter SUPERFAMILY SSF103473 3.7E-62 28 68 IPR016196 Major facilitator superfamily domain, general substrate transporter ProSiteProfiles PS50850 20.8 74 523 IPR020846 Major facilitator superfamily domain SUPERFAMILY SSF103473 3.7E-62 116 519 IPR016196 Major facilitator superfamily domain, general substrate transporter Pfam PF07690 1.6E-36 119 454 IPR011701 Major facilitator superfamily
Subcellular Localization
Localization	mitochondrion
Evidence	SUBAcon
Pubmed ID	23180787