Basic information
Locus name	AT1G25500
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Nutrient recycling
Effect for Senescence	unclear
Gene Description	choline transporter-related contains weak similarity to CD92 protein [Homo sapiens] gi|16945323|emb|CAC82175
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85
Pathway	Reactome REACT_15518 REACT_20679
Sequence	AT1G25500.1 | Genomic | mRNA | CDS | Protein AT1G25500.2 | Genomic | mRNA | CDS | Protein AT1G25500.3 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. D/L: ratio of DARK 5d/control. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
miRNA Interaction
Details	target: AT1G25500.3  miRNA: ath-miR156a miRNA: ath-miR156a mfe: -31.1 kcal/mol  p-value: 0.002129  position:  3  target 5' U  C             C   U 3'             UG CUCACUCUCUUCU UCA              AC GAGUGAGAGAAGA AGU   miRNA  3' C                C     5'  target: AT1G25500.3  miRNA: ath-miR156b miRNA: ath-miR156b mfe: -31.1 kcal/mol  p-value: 0.001625  position:  3  target 5' U  C             C   U 3'             UG CUCACUCUCUUCU UCA              AC GAGUGAGAGAAGA AGU   miRNA  3' C                C     5'  target: AT1G25500.3  miRNA: ath-miR156c miRNA: ath-miR156c mfe: -31.1 kcal/mol  p-value: 0.001998  position:  3  target 5' U  C             C   U 3'             UG CUCACUCUCUUCU UCA              AC GAGUGAGAGAAGA AGU   miRNA  3' C                C     5'  target: AT1G25500.3  miRNA: ath-miR156d miRNA: ath-miR156d mfe: -31.1 kcal/mol  p-value: 0.002244  position:  3  target 5' U  C             C   U 3'             UG CUCACUCUCUUCU UCA              AC GAGUGAGAGAAGA AGU   miRNA  3' C                C     5'  target: AT1G25500.3  miRNA: ath-miR156e miRNA: ath-miR156e mfe: -31.1 kcal/mol  p-value: 0.001474  position:  3  target 5' U  C             C   U 3'             UG CUCACUCUCUUCU UCA              AC GAGUGAGAGAAGA AGU   miRNA  3' C                C     5'  target: AT1G25500.3  miRNA: ath-miR156f miRNA: ath-miR156f mfe: -31.1 kcal/mol  p-value: 0.002140  position:  3  target 5' U  C             C   U 3'             UG CUCACUCUCUUCU UCA              AC GAGUGAGAGAAGA AGU   miRNA  3' C                C     5'  target: AT1G25500.3  miRNA: ath-miR156g miRNA: ath-miR156g mfe: -30.4 kcal/mol  p-value: 0.002076  position:  3  target 5' U  C             C  A 3'             UG CUCACUCUCUUCU UC              AC GAGUGAGAGAAGA AG   miRNA  3' C                C  C 5'
Ortholog Group
Ortholog Groups: OG5_129855	Accession Taxon NP_001117355 Arabidopsis thaliana NP_173921 ( AT1G25500 ) Arabidopsis thaliana NP_849707 Arabidopsis thaliana NP_001047233 Oryza sativa Japonica Group e_gw1.191.39.1 Physcomitrella patens subsp. patens e_gw1.33.108.1 Physcomitrella patens subsp. patens estExt_Genewise1.C_3030019 Physcomitrella patens subsp. patens 28883.m000742 Ricinus communis estExt_fgenesh1_pg.C_chr_10092 Thalassiosira pseudonana CCMP1335 estExt_fgenesh1_pg.C_chr_50623 Thalassiosira pseudonana CCMP1335 estExt_fgenesh1_pg.C_chr_50648 Thalassiosira pseudonana CCMP1335 estExt_fgenesh1_pg.C_chr_50677 Thalassiosira pseudonana CCMP1335 XP_002946479 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR12385 7.8E-169 8 488 IPR007603 Choline transporter-like Pfam PF04515 3.0E-70 156 457 IPR007603 Choline transporter-like