Leaf Senescence DataBase

Basic information

Locus name

AT1G61800

Organism

Arabidopsis thaliana

Taxonomic identifier

[NCBI]

Function category

Nutrient recycling

Effect for Senescence

unclear

Gene Description

glucose-6-phosphate/phosphate translocator, putative similar to glucose-6-phosphate/phosphate-translocator precursor GI:2997591 from [Pisum sativum]

Evidence

Genomic evidence:microarray data [Ref 1]

References

1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4):567-85

Gene Ontology

biological process	transport
cellular component	integral to membrane
molecular function	transporter activity

Sequence

AT1G61800.1 | Genomic | mRNA | CDS | Protein

Microarray

Sampling

Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ.
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4)

Comparation

Legends:
Col: wild type, indicates the ratio of expression in senescing leaves/green leaves.
NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type.
D/L: ratio of DARK 5d/control.
CD: Cell Death, ratio of starved cell suspension culture/control.
Genes showing at least 3 fold (ratio) up regulation during leaf senescence.

miRNA Interaction

Details

target: AT1G61800.1
miRNA: ath-miR781
miRNA: ath-miR781
mfe: -25.7 kcal/mol
p-value: 0.013536

position:  555
target 5' C                   U 3'
           GAGU UCUGGAAAACUCUG
           UUCA AGGUCUUUUGAGAU
miRNA  3' A    U              U 5'

target: AT1G61800.1
miRNA: ath-miR854a
miRNA: ath-miR854a
mfe: -30.0 kcal/mol
p-value: 0.008130

position:  721
target 5' C        G      U      U 3'
           CUCUUCCU UCUAUC CUC UC
           GAGGAGGA GGAUAG GAG AG
miRNA  3'          G          U    5'

target: AT1G61800.1
miRNA: ath-miR854b
miRNA: ath-miR854b
mfe: -30.0 kcal/mol
p-value: 0.009603

position:  721
target 5' C        G      U      U 3'
           CUCUUCCU UCUAUC CUC UC
           GAGGAGGA GGAUAG GAG AG
miRNA  3'          G          U    5'

target: AT1G61800.1
miRNA: ath-miR854c
miRNA: ath-miR854c
mfe: -30.0 kcal/mol
p-value: 0.008150

position:  721
target 5' C        G      U      U 3'
           CUCUUCCU UCUAUC CUC UC
           GAGGAGGA GGAUAG GAG AG
miRNA  3'          G          U    5'

target: AT1G61800.1
miRNA: ath-miR854d
miRNA: ath-miR854d
mfe: -30.0 kcal/mol
p-value: 0.008516

position:  721
target 5' C        G      U      U 3'
           CUCUUCCU UCUAUC CUC UC
           GAGGAGGA GGAUAG GAG AG
miRNA  3'          G          U    5'

target: AT1G61800.1
miRNA: ath-miR854e
miRNA: ath-miR854e
mfe: -30.0 kcal/mol
p-value: 0.009843

position:  721
target 5' C        G      U      U 3'
           CUCUUCCU UCUAUC CUC UC
           GAGGAGGA GGAUAG GAG AG
miRNA  3'          G          U    5'

Ortholog Group

Ortholog Groups: OG5_128059

Accession	Taxon
NP_197265	Arabidopsis thaliana
NP_198317	Arabidopsis thaliana
NP_564785 ( AT1G61800 )	Arabidopsis thaliana
NP_566142	Arabidopsis thaliana
NP_568655	Arabidopsis thaliana
NP_568812	Arabidopsis thaliana
CMK114C	Cyanidioschyzon merolae strain 10D
CMN328C	Cyanidioschyzon merolae strain 10D
CMO269C	Cyanidioschyzon merolae strain 10D
153782	Chlamydomonas reinhardtii
182319	Chlamydomonas reinhardtii
191135	Chlamydomonas reinhardtii
ACO65255	Micromonas sp. RCC299
ACO67526	Micromonas sp. RCC299
NP_001042150	Oryza sativa Japonica Group
NP_001054772	Oryza sativa Japonica Group
NP_001055001	Oryza sativa Japonica Group
NP_001059819	Oryza sativa Japonica Group
NP_001061152	Oryza sativa Japonica Group
NP_001061598	Oryza sativa Japonica Group
NP_001062805	Oryza sativa Japonica Group
0300010167	Ostreococcus tauri
estExt_gwp_GeneWisePlus.C_Chr_05.00010112	Ostreococcus tauri
gw1.03.00.273.1	Ostreococcus tauri
e_gw1.190.46.1	Physcomitrella patens subsp. patens
e_gw1.70.131.1	Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_10239	Physcomitrella patens subsp. patens
gw1.18.78.1	Physcomitrella patens subsp. patens
gw1.241.76.1	Physcomitrella patens subsp. patens
gw1.9.300.1	Physcomitrella patens subsp. patens
29666.m001492	Ricinus communis
29842.m003630	Ricinus communis
29917.m001976	Ricinus communis
30147.m013936	Ricinus communis
30148.m001426	Ricinus communis
30148.m001427	Ricinus communis
30174.m009118	Ricinus communis
e_gw1.18.71.1	Thalassiosira pseudonana CCMP1335
gw1.2.375.1	Thalassiosira pseudonana CCMP1335
thaps1_ua_kg.chr_4000330	Thalassiosira pseudonana CCMP1335
XP_002952945	Volvox carteri f. nagariensis
XP_002959029	Volvox carteri f. nagariensis

Cross Link

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PANTHER	PTHR11132	4.4E-107	64	388	No hit	NA
TIGRFAM	TIGR00817	2.4E-124	95	387	IPR004696	Tpt phosphate/phosphoenolpyruvate translocator
Pfam	PF00892	3.0E-8	112	229	IPR000620	Drug/metabolite transporter
SUPERFAMILY	SSF103481	8.1E-7	139	231	No hit	NA
Pfam	PF03151	2.0E-38	240	384	IPR004853	Domain of unknown function DUF250
SUPERFAMILY	SSF103481	5.0E-5	289	385	No hit	NA

Subcellular Localization

Localization

plastid

Evidence

SUBAcon

Pubmed ID

23180787