Leaf Senescence DataBase

Basic information

Locus name

AT2G34660

Organism

Arabidopsis thaliana

Taxonomic identifier

[NCBI]

Function category

Nutrient recycling

Effect for Senescence

unclear

Gene Description

glutathione S-conjugate ABC transporter (MRP2) almost identical to MgATP-energized glutathione S-conjugate pump GI:2909781 from [Arabidopsis thaliana]

Evidence

Genomic evidence:microarray data [Ref 1]

References

1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4):567-85

Gene Ontology

biological process	transmembrane transport transport
cellular component	integral to membrane
molecular function	ATP binding ATPase activity, coupled to transmembrane movement of substances ATPase activity

Sequence

AT2G34660.1 | Genomic | mRNA | CDS | Protein

Microarray

Sampling

Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ.
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4)

Comparation

Legends:
Col: wild type, indicates the ratio of expression in senescing leaves/green leaves.
NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type.
D/L: ratio of DARK 5d/control.
CD: Cell Death, ratio of starved cell suspension culture/control.
Genes showing at least 3 fold (ratio) up regulation during leaf senescence.

Ortholog Group

Ortholog Groups: OG5_126561

Accession	Taxon
NP_001031116	Arabidopsis thaliana
NP_171908	Arabidopsis thaliana
NP_174329	Arabidopsis thaliana
NP_174330	Arabidopsis thaliana
NP_174331	Arabidopsis thaliana
NP_178811	Arabidopsis thaliana
NP_181013 ( AT2G34660 )	Arabidopsis thaliana
NP_182301	Arabidopsis thaliana
NP_187915	Arabidopsis thaliana
NP_187916	Arabidopsis thaliana
NP_187917	Arabidopsis thaliana
NP_188762	Arabidopsis thaliana
NP_191473	Arabidopsis thaliana
NP_191575	Arabidopsis thaliana
NP_191656	Arabidopsis thaliana
NP_191829	Arabidopsis thaliana
NP_850575	Arabidopsis thaliana
NP_974299	Arabidopsis thaliana
NP_974300	Arabidopsis thaliana
CMN251C	Cyanidioschyzon merolae strain 10D
134058	Chlamydomonas reinhardtii
143900	Chlamydomonas reinhardtii
190380	Chlamydomonas reinhardtii
54676	Chlamydomonas reinhardtii
ACO60871	Micromonas sp. RCC299
ACO69477	Micromonas sp. RCC299
NP_001042159	Oryza sativa Japonica Group
NP_001043000	Oryza sativa Japonica Group
NP_001046583	Oryza sativa Japonica Group
NP_001046585	Oryza sativa Japonica Group
NP_001048934	Oryza sativa Japonica Group
NP_001052251	Oryza sativa Japonica Group
NP_001052252	Oryza sativa Japonica Group
NP_001053695	Oryza sativa Japonica Group
NP_001053696	Oryza sativa Japonica Group
NP_001053904	Oryza sativa Japonica Group
NP_001054864	Oryza sativa Japonica Group
NP_001056870	Oryza sativa Japonica Group
NP_001056996	Oryza sativa Japonica Group
NP_001065790	Oryza sativa Japonica Group
NP_001067031	Oryza sativa Japonica Group
e_gw1.03.00.16.1	Ostreococcus tauri
e_gw1.07.00.6.1	Ostreococcus tauri
e_gw1.121.4.1	Physcomitrella patens subsp. patens
e_gw1.136.12.1	Physcomitrella patens subsp. patens
e_gw1.21.192.1	Physcomitrella patens subsp. patens
e_gw1.227.2.1	Physcomitrella patens subsp. patens
e_gw1.402.38.1	Physcomitrella patens subsp. patens
estExt_Genewise1.C_1220086	Physcomitrella patens subsp. patens
estExt_Genewise1.C_2230056	Physcomitrella patens subsp. patens
estExt_Genewise1.C_2930039	Physcomitrella patens subsp. patens
estExt_fgenesh1_pg.C_1420018	Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_1050058	Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_2240079	Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_3520041	Physcomitrella patens subsp. patens
fgenesh1_pg.scaffold_518000010	Physcomitrella patens subsp. patens
fgenesh1_pm.scaffold_540000001	Physcomitrella patens subsp. patens
28694.m000689	Ricinus communis
29337.m000213	Ricinus communis
29337.m000214	Ricinus communis
29337.m000216	Ricinus communis
29637.m000727	Ricinus communis
29929.m004739	Ricinus communis
29932.m000603	Ricinus communis
29932.m000604	Ricinus communis
29983.m003220	Ricinus communis
29986.m001594	Ricinus communis
30131.m006854	Ricinus communis
30169.m006551	Ricinus communis
30869.m000035	Ricinus communis
e_gw1.23.1.1	Thalassiosira pseudonana CCMP1335
e_gw1.4.10.1	Thalassiosira pseudonana CCMP1335
estExt_gwp_gw1.C_chr_40418	Thalassiosira pseudonana CCMP1335
estExt_gwp_gw1.C_chr_70405	Thalassiosira pseudonana CCMP1335
fgenesh1_pg.C_bd_13x1000026	Thalassiosira pseudonana CCMP1335
gw1.13.6.1	Thalassiosira pseudonana CCMP1335
thaps1_ua_kg.chr_23000014	Thalassiosira pseudonana CCMP1335
XP_002946948	Volvox carteri f. nagariensis
XP_002950646	Volvox carteri f. nagariensis
XP_002951320	Volvox carteri f. nagariensis
XP_002952511	Volvox carteri f. nagariensis
XP_002957801	Volvox carteri f. nagariensis

Cross Link

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PANTHER	PTHR24223	0.0	48	1485	No hit	NA
SUPERFAMILY	SSF90123	3.8E-45	286	598	IPR011527	ABC transporter, transmembrane domain, type 1
ProSiteProfiles	PS50929	40.6	303	582	IPR017940	ABC transporter, integral membrane type 1
Pfam	PF00664	3.9E-42	305	570	IPR001140	ABC transporter, transmembrane domain
SUPERFAMILY	SSF52540	4.9E-56	608	837	IPR027417	P-loop containing nucleoside triphosphate hydrolase
ProSiteProfiles	PS50893	23.3	614	838	IPR003439	ABC transporter-like
SMART	SM00382	1.3E-8	641	824	IPR003593	AAA+ ATPase domain
Pfam	PF00005	2.7E-13	656	767	IPR003439	ABC transporter-like
ProSitePatterns	PS00211	NA	740	754	IPR017871	ABC transporter, conserved site
SUPERFAMILY	SSF90123	2.4E-50	905	1222	IPR011527	ABC transporter, transmembrane domain, type 1
ProSiteProfiles	PS50929	32.6	924	1205	IPR017940	ABC transporter, integral membrane type 1
Pfam	PF00664	6.2E-26	925	1185	IPR001140	ABC transporter, transmembrane domain
SUPERFAMILY	SSF52540	2.9E-71	1232	1468	IPR027417	P-loop containing nucleoside triphosphate hydrolase
ProSiteProfiles	PS50893	18.2	1242	1476	IPR003439	ABC transporter-like
SMART	SM00382	2.5E-12	1268	1461	IPR003593	AAA+ ATPase domain
Pfam	PF00005	1.6E-16	1283	1407	IPR003439	ABC transporter-like
ProSitePatterns	PS00211	NA	1379	1393	IPR017871	ABC transporter, conserved site

Subcellular Localization

Localization

vacuole

Evidence

SUBAcon

Pubmed ID

23180787