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Locus name | AT2G47000 |
Organism | Arabidopsis thaliana | Taxonomic identifier | [NCBI] | Function category | Nutrient recycling | Effect for Senescence | unclear | Gene Description | multidrug resistant (MDR) ABC transporter, putative similar to multidrug-resistant protein CjMDR1 [Coptis japonica] GI:14715462, MDR-like p-glycoprotein [Arabidopsis thaliana] GI:24324262; contains Pfam profiles PF00005: ABC transporter, PF00664: ABC transporter transmembrane region | Evidence | Genomic evidence:microarray data [Ref 1] | References | 1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJComparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.Plant J. 2005 May;42(4):567-85 | Gene Ontology | | Sequence | AT2G47000.1 | Genomic | mRNA | CDS | Protein
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| Sampling |
Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4) | Comparation |
Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. D/L: ratio of DARK 5d/control. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence. |
miRNA Interaction | |
| Details | | target: AT2G47000.1 miRNA: ath-miR407 miRNA: ath-miR407 mfe: -23.8 kcal/mol p-value: 0.006831
position: 2382 target 5' G U A 3' AUCAGAAGUAUGUG UUUGAG UGGUUUUCAUAUAC AAAUUU miRNA 3' U 5'
target: AT2G47000.1 miRNA: ath-miR844 miRNA: ath-miR844 mfe: -23.0 kcal/mol p-value: 0.051421
position: 2277 target 5' A C A C 3' AGCUU UGGGCAAUC UAUU UCGAA AUUCGUUAG AUGG miRNA 3' U A U 5'
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Ortholog Group | |
| Ortholog Groups: OG5_126596 | |
Cross Link | |
| Database | Entry ID | E-value | Start | End | InterPro ID | Description | Coils | Coil | NA | 14 | 44 | No hit | NA | PANTHER | PTHR24222 | 0.0 | 38 | 1286 | No hit | NA | SUPERFAMILY | SSF90123 | 1.1E-57 | 50 | 365 | IPR011527 | ABC transporter, transmembrane domain, type 1 | Pfam | PF00664 | 1.1E-52 | 63 | 337 | IPR001140 | ABC transporter, transmembrane domain | ProSiteProfiles | PS50929 | 46.4 | 64 | 349 | IPR017940 | ABC transporter, integral membrane type 1 | SUPERFAMILY | SSF52540 | 2.7E-88 | 375 | 622 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase | ProSiteProfiles | PS50893 | 25.2 | 384 | 620 | IPR003439 | ABC transporter-like | SMART | SM00382 | 6.5E-15 | 411 | 583 | IPR003593 | AAA+ ATPase domain | Pfam | PF00005 | 1.3E-23 | 426 | 551 | IPR003439 | ABC transporter-like | ProSitePatterns | PS00211 | NA | 523 | 537 | IPR017871 | ABC transporter, conserved site | Coils | Coil | NA | 618 | 639 | No hit | NA | SUPERFAMILY | SSF90123 | 5.9E-63 | 702 | 1022 | IPR011527 | ABC transporter, transmembrane domain, type 1 | Pfam | PF00664 | 8.0E-54 | 721 | 994 | IPR001140 | ABC transporter, transmembrane domain | ProSiteProfiles | PS50929 | 47.9 | 721 | 1007 | IPR017940 | ABC transporter, integral membrane type 1 | SUPERFAMILY | SSF52540 | 9.0E-88 | 1034 | 1281 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase | ProSiteProfiles | PS50893 | 24.3 | 1042 | 1279 | IPR003439 | ABC transporter-like | SMART | SM00382 | 1.4E-17 | 1069 | 1242 | IPR003593 | AAA+ ATPase domain | Pfam | PF00005 | 7.4E-22 | 1084 | 1210 | IPR003439 | ABC transporter-like | ProSitePatterns | PS00211 | NA | 1182 | 1196 | IPR017871 | ABC transporter, conserved site |
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| Localization | plasma membrane | Evidence | SUBAcon | Pubmed ID | 23180787 |
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