Leaf Senescence DataBase

Basic information

Locus name

AT3G62150

Organism

Arabidopsis thaliana

Taxonomic identifier

[NCBI]

Function category

Nutrient recycling

Effect for Senescence

unclear

Gene Description

multidrug resistant (MDR) ABC transporter, putative similar to multidrug-resistant protein CjMDR1 GI:14715462 from [Coptis japonica]; contains Pfam profiles PF00005: ABC transporter, PF00664: ABC transporter transmembrane region

Evidence

Genomic evidence:microarray data [Ref 1]

References

1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4):567-85

Gene Ontology

biological process	transmembrane transport transport
cellular component	integral to membrane
molecular function	ATP binding ATPase activity, coupled to transmembrane movement of substances ATPase activity

Sequence

AT3G62150.1 | Genomic | mRNA | CDS | Protein

Microarray

Sampling

Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ.
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4)

Comparation

Legends:
Col: wild type, indicates the ratio of expression in senescing leaves/green leaves.
NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type.
D/L: ratio of DARK 5d/control.
CD: Cell Death, ratio of starved cell suspension culture/control.
Genes showing at least 3 fold (ratio) up regulation during leaf senescence.

miRNA Interaction

Details

target: AT3G62150.1
miRNA: ath-miR2112-3p
miRNA: ath-miR2112-3p
mfe: -24.2 kcal/mol
p-value: 0.045113

position:  1310
target 5' U  G           A     A 3'
           UG GCAGA GCGGA GUGGG
           AC CGUUU CGCCU UAUUU
miRNA  3'    G     A     A     C 5'

target: AT3G62150.1
miRNA: ath-miR396a
miRNA: ath-miR396a
mfe: -24.6 kcal/mol
p-value: 0.077762

position:  3242
target 5' U    G               C 3'
           GGUU GAGAGAGC G GGAG
           UCAA UUCUUUCG C CCUU
miRNA  3' G    G        A A      5'

target: AT3G62150.1
miRNA: ath-miR396b
miRNA: ath-miR396b
mfe: -24.0 kcal/mol
p-value: 0.094033

position:  3242
target 5' U    G               C 3'
           GGUU GAGAGAGC G GGAG
           UCAA UUCUUUCG C CCUU
miRNA  3' U    G        A A      5'

Ortholog Group

Ortholog Groups: OG5_126596

Accession	Taxon
NP_171753	Arabidopsis thaliana
NP_171754	Arabidopsis thaliana
NP_172538	Arabidopsis thaliana
NP_174115	Arabidopsis thaliana
NP_174122	Arabidopsis thaliana
NP_181228	Arabidopsis thaliana
NP_181480	Arabidopsis thaliana
NP_182223	Arabidopsis thaliana
NP_189475	Arabidopsis thaliana
NP_189477	Arabidopsis thaliana
NP_189479	Arabidopsis thaliana
NP_189480	Arabidopsis thaliana
NP_189528	Arabidopsis thaliana
NP_191092	Arabidopsis thaliana
NP_191774 ( AT3G62150 )	Arabidopsis thaliana
NP_192091	Arabidopsis thaliana
NP_192092	Arabidopsis thaliana
NP_193539	Arabidopsis thaliana
NP_194326	Arabidopsis thaliana
NP_199466	Arabidopsis thaliana
NP_683599	Arabidopsis thaliana
CMD148C	Cyanidioschyzon merolae strain 10D
138602	Chlamydomonas reinhardtii
138672	Chlamydomonas reinhardtii
ACO66535	Micromonas sp. RCC299
NP_001042790	Oryza sativa Japonica Group
NP_001043254	Oryza sativa Japonica Group
NP_001043962	Oryza sativa Japonica Group
NP_001044110	Oryza sativa Japonica Group
NP_001045564	Oryza sativa Japonica Group
NP_001046144	Oryza sativa Japonica Group
NP_001046147	Oryza sativa Japonica Group
NP_001046148	Oryza sativa Japonica Group
NP_001047803	Oryza sativa Japonica Group
NP_001049736	Oryza sativa Japonica Group
NP_001052982	Oryza sativa Japonica Group
NP_001053113	Oryza sativa Japonica Group
NP_001054045	Oryza sativa Japonica Group
NP_001056226	Oryza sativa Japonica Group
NP_001062529	Oryza sativa Japonica Group
estExt_gwp_GeneWisePlus.C_Chr_01.00010580	Ostreococcus tauri
e_gw1.1.462.1	Physcomitrella patens subsp. patens
e_gw1.173.88.1	Physcomitrella patens subsp. patens
e_gw1.29.17.1	Physcomitrella patens subsp. patens
e_gw1.38.19.1	Physcomitrella patens subsp. patens
estExt_Genewise1.C_3910045	Physcomitrella patens subsp. patens
estExt_fgenesh1_pg.C_2520035	Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_3380009	Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_3970003	Physcomitrella patens subsp. patens
fgenesh1_pm.scaffold_188000008	Physcomitrella patens subsp. patens
fgenesh1_pm.scaffold_28000043	Physcomitrella patens subsp. patens
28166.m001066	Ricinus communis
28180.m000390	Ricinus communis
28531.m000016	Ricinus communis
29581.m000253	Ricinus communis
29693.m002084	Ricinus communis
29693.m002086	Ricinus communis
29727.m000475	Ricinus communis
29822.m003425	Ricinus communis
29822.m003426	Ricinus communis
29822.m003496	Ricinus communis
29889.m003408	Ricinus communis
29889.m003409	Ricinus communis
29912.m005427	Ricinus communis
29929.m004786	Ricinus communis
30054.m000810	Ricinus communis
30076.m004556	Ricinus communis
30076.m004557	Ricinus communis
30076.m004558	Ricinus communis
30076.m004559	Ricinus communis
30078.m002286	Ricinus communis
30098.m001722	Ricinus communis
30170.m014384	Ricinus communis
e_gw1.12.4.1	Thalassiosira pseudonana CCMP1335
estExt_fgenesh1_pg.C_chr_30897	Thalassiosira pseudonana CCMP1335
estExt_fgenesh1_pg.C_chr_50031	Thalassiosira pseudonana CCMP1335
XP_002946641	Volvox carteri f. nagariensis

Cross Link

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Coils	Coil	NA	39	60	No hit	NA
PANTHER	PTHR24222	0.0	55	1292	No hit	NA
SUPERFAMILY	SSF90123	2.8E-55	67	387	IPR011527	ABC transporter, transmembrane domain, type 1
Pfam	PF00664	2.9E-50	80	356	IPR001140	ABC transporter, transmembrane domain
ProSiteProfiles	PS50929	45.2	81	368	IPR017940	ABC transporter, integral membrane type 1
SUPERFAMILY	SSF52540	9.7E-89	395	641	IPR027417	P-loop containing nucleoside triphosphate hydrolase
ProSiteProfiles	PS50893	25.6	403	639	IPR003439	ABC transporter-like
SMART	SM00382	1.7E-15	430	616	IPR003593	AAA+ ATPase domain
Pfam	PF00005	8.1E-24	445	570	IPR003439	ABC transporter-like
ProSitePatterns	PS00211	NA	542	556	IPR017871	ABC transporter, conserved site
SUPERFAMILY	SSF90123	3.3E-58	713	1032	IPR011527	ABC transporter, transmembrane domain, type 1
Pfam	PF00664	1.5E-46	731	998	IPR001140	ABC transporter, transmembrane domain
ProSiteProfiles	PS50929	43.7	731	1013	IPR017940	ABC transporter, integral membrane type 1
SUPERFAMILY	SSF52540	3.5E-88	1038	1286	IPR027417	P-loop containing nucleoside triphosphate hydrolase
ProSiteProfiles	PS50893	24.5	1048	1285	IPR003439	ABC transporter-like
SMART	SM00382	1.4E-17	1075	1248	IPR003593	AAA+ ATPase domain
Pfam	PF00005	1.9E-22	1090	1216	IPR003439	ABC transporter-like
ProSitePatterns	PS00211	NA	1188	1202	IPR017871	ABC transporter, conserved site

Subcellular Localization

Localization

plasma membrane

Evidence

SUBAcon

Pubmed ID

23180787