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Locus name | AT3G62150 |
Organism | Arabidopsis thaliana | Taxonomic identifier | [NCBI] | Function category | Nutrient recycling | Effect for Senescence | unclear | Gene Description | multidrug resistant (MDR) ABC transporter, putative similar to multidrug-resistant protein CjMDR1 GI:14715462 from [Coptis japonica]; contains Pfam profiles PF00005: ABC transporter, PF00664: ABC transporter transmembrane region | Evidence | Genomic evidence:microarray data [Ref 1] | References | 1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJComparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.Plant J. 2005 May;42(4):567-85 | Gene Ontology | | Sequence | AT3G62150.1 | Genomic | mRNA | CDS | Protein
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| Sampling |
Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4) | Comparation |
Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. D/L: ratio of DARK 5d/control. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence. |
miRNA Interaction | |
| Details | | target: AT3G62150.1 miRNA: ath-miR2112-3p miRNA: ath-miR2112-3p mfe: -24.2 kcal/mol p-value: 0.045113
position: 1310 target 5' U G A A 3' UG GCAGA GCGGA GUGGG AC CGUUU CGCCU UAUUU miRNA 3' G A A C 5'
target: AT3G62150.1 miRNA: ath-miR396a miRNA: ath-miR396a mfe: -24.6 kcal/mol p-value: 0.077762
position: 3242 target 5' U G C 3' GGUU GAGAGAGC G GGAG UCAA UUCUUUCG C CCUU miRNA 3' G G A A 5'
target: AT3G62150.1 miRNA: ath-miR396b miRNA: ath-miR396b mfe: -24.0 kcal/mol p-value: 0.094033
position: 3242 target 5' U G C 3' GGUU GAGAGAGC G GGAG UCAA UUCUUUCG C CCUU miRNA 3' U G A A 5'
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Ortholog Group | |
| Ortholog Groups: OG5_126596 | |
Cross Link | |
| Database | Entry ID | E-value | Start | End | InterPro ID | Description | Coils | Coil | NA | 39 | 60 | No hit | NA | PANTHER | PTHR24222 | 0.0 | 55 | 1292 | No hit | NA | SUPERFAMILY | SSF90123 | 2.8E-55 | 67 | 387 | IPR011527 | ABC transporter, transmembrane domain, type 1 | Pfam | PF00664 | 2.9E-50 | 80 | 356 | IPR001140 | ABC transporter, transmembrane domain | ProSiteProfiles | PS50929 | 45.2 | 81 | 368 | IPR017940 | ABC transporter, integral membrane type 1 | SUPERFAMILY | SSF52540 | 9.7E-89 | 395 | 641 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase | ProSiteProfiles | PS50893 | 25.6 | 403 | 639 | IPR003439 | ABC transporter-like | SMART | SM00382 | 1.7E-15 | 430 | 616 | IPR003593 | AAA+ ATPase domain | Pfam | PF00005 | 8.1E-24 | 445 | 570 | IPR003439 | ABC transporter-like | ProSitePatterns | PS00211 | NA | 542 | 556 | IPR017871 | ABC transporter, conserved site | SUPERFAMILY | SSF90123 | 3.3E-58 | 713 | 1032 | IPR011527 | ABC transporter, transmembrane domain, type 1 | Pfam | PF00664 | 1.5E-46 | 731 | 998 | IPR001140 | ABC transporter, transmembrane domain | ProSiteProfiles | PS50929 | 43.7 | 731 | 1013 | IPR017940 | ABC transporter, integral membrane type 1 | SUPERFAMILY | SSF52540 | 3.5E-88 | 1038 | 1286 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase | ProSiteProfiles | PS50893 | 24.5 | 1048 | 1285 | IPR003439 | ABC transporter-like | SMART | SM00382 | 1.4E-17 | 1075 | 1248 | IPR003593 | AAA+ ATPase domain | Pfam | PF00005 | 1.9E-22 | 1090 | 1216 | IPR003439 | ABC transporter-like | ProSitePatterns | PS00211 | NA | 1188 | 1202 | IPR017871 | ABC transporter, conserved site |
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| Localization | plasma membrane | Evidence | SUBAcon | Pubmed ID | 23180787 |
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