Basic information
Locus name	AT1G03550
Alias	SCAMP
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Nutrient recycling
Effect for Senescence	unclear
Gene Description	secretory carrier membrane protein (SCAMP) family protein contains Pfam domain, PF04144: SCAMP family
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85 2: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process protein transport cellular component integral to membrane
Sequence	AT1G03550.1 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. D/L: ratio of DARK 5d/control. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
miRNA Interaction
Details	target: AT1G03550.1  miRNA: ath-miR156a miRNA: ath-miR156a mfe: -25.9 kcal/mol  p-value: 0.015099  position:  1134  target 5' C     A             U 3'             UGC C ACUCUCUUUUGUU              ACG G UGAGAGAAGACAG   miRNA  3' C   A               U 5'  target: AT1G03550.1  miRNA: ath-miR156b miRNA: ath-miR156b mfe: -25.9 kcal/mol  p-value: 0.014894  position:  1134  target 5' C     A             U 3'             UGC C ACUCUCUUUUGUU              ACG G UGAGAGAAGACAG   miRNA  3' C   A               U 5'  target: AT1G03550.1  miRNA: ath-miR156c miRNA: ath-miR156c mfe: -25.9 kcal/mol  p-value: 0.012029  position:  1134  target 5' C     A             U 3'             UGC C ACUCUCUUUUGUU              ACG G UGAGAGAAGACAG   miRNA  3' C   A               U 5'  target: AT1G03550.1  miRNA: ath-miR156d miRNA: ath-miR156d mfe: -25.9 kcal/mol  p-value: 0.015576  position:  1134  target 5' C     A             U 3'             UGC C ACUCUCUUUUGUU              ACG G UGAGAGAAGACAG   miRNA  3' C   A               U 5'  target: AT1G03550.1  miRNA: ath-miR156e miRNA: ath-miR156e mfe: -25.9 kcal/mol  p-value: 0.012172  position:  1134  target 5' C     A             U 3'             UGC C ACUCUCUUUUGUU              ACG G UGAGAGAAGACAG   miRNA  3' C   A               U 5'  target: AT1G03550.1  miRNA: ath-miR156f miRNA: ath-miR156f mfe: -25.9 kcal/mol  p-value: 0.015041  position:  1134  target 5' C     A             U 3'             UGC C ACUCUCUUUUGUU              ACG G UGAGAGAAGACAG   miRNA  3' C   A               U 5'  target: AT1G03550.1  miRNA: ath-miR156g miRNA: ath-miR156g mfe: -26.0 kcal/mol  p-value: 0.013257  position:  1134  target 5' C     A             U 3'             UGC C ACUCUCUUUUGUU              ACG G UGAGAGAAGACAG   miRNA  3' C   A               C 5'
Ortholog Group
Ortholog Groups: OG5_128585	Accession Taxon NP_172584 Arabidopsis thaliana NP_174485 Arabidopsis thaliana NP_176320 Arabidopsis thaliana NP_179680 Arabidopsis thaliana NP_563686 ( AT1G03550 ) Arabidopsis thaliana 166432 Chlamydomonas reinhardtii ACO63967 Micromonas sp. RCC299 ACO64331 Micromonas sp. RCC299 NP_001044437 Oryza sativa Japonica Group NP_001047823 Oryza sativa Japonica Group NP_001050560 Oryza sativa Japonica Group NP_001053734 Oryza sativa Japonica Group NP_001055977 Oryza sativa Japonica Group NP_001060004 Oryza sativa Japonica Group 1700010217 Ostreococcus tauri e_gw1.257.78.1 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_2970049 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_300201 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_500063 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_580168 Physcomitrella patens subsp. patens 29917.m001950 Ricinus communis 29983.m003249 Ricinus communis 30068.m002668 Ricinus communis XP_002949346 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR10687 9.2E-156 1 283 IPR007273 SCAMP Coils Coil NA 55 83 No hit NA Pfam PF04144 1.7E-56 92 265 IPR007273 SCAMP