Basic information
Locus name	AT5G53550
Alias	YLS3
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others:Unknown
Effect for Senescence	Unclear
Gene Description	YELLOW STRIPE LIKE 3
Evidence	Molecular evidence:DDRT-PCR [Ref 1]
References	1: Yoshida S, Ito M, Nishida I, Watanabe A Isolation and RNA gel blot analysis of genes that could serve as potential molecular markers for leaf senescence in Arabidopsis thaliana. Plant Cell Physiol. 2001 Feb;42(2):170-8
Gene Ontology	biological process transmembrane transport
Sequence	AT5G53550.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: AT5G53550.1  miRNA: ath-miR1888 miRNA: ath-miR1888 mfe: -19.7 kcal/mol  p-value: 0.117204  position:  2078  target 5' C              U    U 3'             UUUUUACGAGUUUU ACUU              AGAAGUGUUUAGAA UGAA   miRNA  3' A              U    U 5'  target: AT5G53550.1  miRNA: ath-miR2111a miRNA: ath-miR2111a mfe: -25.6 kcal/mol  p-value: 0.033636  position:  1444  target 5' G      G C            A 3'             GGACUU U GGAUGCGGGUUG              UUUGGA G CCUACGUCUAAU   miRNA  3' A        U              5'  target: AT5G53550.1  miRNA: ath-miR2111b miRNA: ath-miR2111b mfe: -25.6 kcal/mol  p-value: 0.032293  position:  1444  target 5' G      G C            A 3'             GGACUU U GGAUGCGGGUUG              UUUGGA G CCUACGUCUAAU   miRNA  3' A        U              5'  target: AT5G53550.1  miRNA: ath-miR414 miRNA: ath-miR414 mfe: -24.2 kcal/mol  p-value: 0.017772  position:  48  target 5' G    U                G 3'             GA G AUGAUGAUGGAGA GA              CU C UACUACUACUUCU CU   miRNA  3' A  G               A    5'  target: AT5G53550.1  miRNA: ath-miR426 miRNA: ath-miR426 mfe: -22.6 kcal/mol  p-value: 0.015833  position:  1779  target 5' U  U            A     U 3'             CG UAGGGAUAGGUU CCGGA              GC AUUCCUGUUUAA GGUUU   miRNA  3'                 A     U 5'  target: AT5G53550.1  miRNA: ath-miR869 miRNA: ath-miR869 mfe: -24.1 kcal/mol  p-value: 0.034975  position:  324  target 5' C   A          U      A 3'             CAA GCCGGGAUUG GACUAA              GUU UGGUCUUAAC UUGGUU   miRNA  3'     G                 A 5'
Ortholog Group
Ortholog Groups: OG5_129625	Accession Taxon NP_176750 Arabidopsis thaliana NP_197826 Arabidopsis thaliana NP_198916 Arabidopsis thaliana NP_200167 ( AT5G53550 ) Arabidopsis thaliana NP_564525 Arabidopsis thaliana NP_566584 Arabidopsis thaliana NP_566806 Arabidopsis thaliana NP_567694 Arabidopsis thaliana ACO62052 Micromonas sp. RCC299 NP_001042539 Oryza sativa Japonica Group NP_001044692 Oryza sativa Japonica Group NP_001045677 Oryza sativa Japonica Group NP_001045678 Oryza sativa Japonica Group NP_001047586 Oryza sativa Japonica Group NP_001052640 Oryza sativa Japonica Group NP_001052641 Oryza sativa Japonica Group NP_001053350 Oryza sativa Japonica Group NP_001053351 Oryza sativa Japonica Group NP_001053353 Oryza sativa Japonica Group NP_001053449 Oryza sativa Japonica Group NP_001053450 Oryza sativa Japonica Group NP_001054241 Oryza sativa Japonica Group NP_001061442 Oryza sativa Japonica Group e_gw1.2.87.1 Physcomitrella patens subsp. patens e_gw1.38.51.1 Physcomitrella patens subsp. patens 29636.m000748 Ricinus communis 29786.m000095 Ricinus communis 30008.m000825 Ricinus communis 30068.m002569 Ricinus communis 30098.m001736 Ricinus communis 30131.m007040 Ricinus communis 30170.m013736 Ricinus communis 30199.m000881 Ricinus communis 38556.m000013 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR31645 0.0 8 671 No hit NA TIGRFAM TIGR00728 1.2E-121 37 652 IPR004813 Oligopeptide transporter, OPT superfamily Pfam PF03169 1.4E-133 41 655 IPR004813 Oligopeptide transporter, OPT superfamily
Subcellular Localization
Localization	plasma membrane
Evidence	SUBAcon
Pubmed ID	23180787