Basic information
Locus name	AT1G05300
Alias	ZIP5
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Nutrient recycling
Effect for Senescence	unclear
Gene Description	metal transporter, putative (ZIP5) identical to putative metal transporter ZIP5 [Arabidopsis thaliana] gi|17385784|gb|AAL38432; similar to zinc transporter protein ZIP1 [Glycine max] gi|15418778|gb|AAK37761; member of the Zinc (Zn2+)-Iron (Fe2+) permease (ZIP) family, PMID:11500563
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85 2: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process metal ion transport transmembrane transport zinc ion transmembrane transport cellular component integral to membrane molecular function metal ion transmembrane transporter activity zinc ion transmembrane transporter activity
Sequence	AT1G05300.1 | Genomic | mRNA | CDS | Protein AT1G05300.2 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
miRNA Interaction
Details	target: AT1G05300.1  miRNA: ath-miR837-5p miRNA: ath-miR837-5p mfe: -23.2 kcal/mol  p-value: 0.043205  position:  621  target 5' G U  G        C     C 3'             G GA GAACAAGA GCUGG              C UU CUUGUUCU UGACU   miRNA  3' A U  G        U     A 5'  target: AT1G05300.2  miRNA: ath-miR837-5p miRNA: ath-miR837-5p mfe: -23.2 kcal/mol  p-value: 0.058542  position:  570  target 5' G U  G        C     C 3'             G GA GAACAAGA GCUGG              C UU CUUGUUCU UGACU   miRNA  3' A U  G        U     A 5'
Ortholog Group
Ortholog Groups: OG5_126707	Accession Taxon NP_172022 ( AT1G05300 ) Arabidopsis thaliana NP_180786 Arabidopsis thaliana NP_187881 Arabidopsis thaliana NP_200760 Arabidopsis thaliana NP_201022 Arabidopsis thaliana NP_567590 Arabidopsis thaliana NP_973762 Arabidopsis thaliana CMG102C Cyanidioschyzon merolae strain 10D CMS155C Cyanidioschyzon merolae strain 10D 146152 Chlamydomonas reinhardtii 153963 Chlamydomonas reinhardtii 168584 Chlamydomonas reinhardtii 183171 Chlamydomonas reinhardtii 196756 Chlamydomonas reinhardtii ACO61373 Micromonas sp. RCC299 NP_001050351 Oryza sativa Japonica Group NP_001053851 Oryza sativa Japonica Group NP_001055818 Oryza sativa Japonica Group NP_001059239 Oryza sativa Japonica Group NP_001061245 Oryza sativa Japonica Group 1600010253 Ostreococcus tauri estExt_fgenesh1_kg.C_1440001 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_1440078 Physcomitrella patens subsp. patens fgenesh1_pg.scaffold_14000217 Physcomitrella patens subsp. patens 27942.m000156 Ricinus communis 30025.m000575 Ricinus communis 30147.m014229 Ricinus communis XP_002951171 Volvox carteri f. nagariensis XP_002954615 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR11040 7.4E-94 28 259 No hit NA TIGRFAM TIGR00820 1.4E-93 33 260 IPR004698 Zinc/iron permease, fungal/plant Pfam PF02535 1.1E-38 48 262 IPR003689 Zinc/iron permease
Subcellular Localization
Localization	plasma membrane
Evidence	SUBAcon
Pubmed ID	23180787