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| Locus name | AT4G21910 |
| Organism | Arabidopsis thaliana |
| Taxonomic identifier | [NCBI] |
| Function category | Nutrient recycling |
| Effect for Senescence | unclear |
| Gene Description | MATE efflux family protein similar to ripening regulated protein DDTFR18 [Lycopersicon esculentum] GI:12231296; contains Pfam profile PF01554: Uncharacterized membrane protein family |
| Evidence | Genomic evidence:microarray data [Ref 1] |
| References | 1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJComparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.Plant J. 2005 May;42(4):567-85 |
| Gene Ontology | |
| Pathway | |
| Sequence | AT4G21910.1 | Genomic | mRNA | CDS | Protein
AT4G21910.2 | Genomic | mRNA | CDS | Protein
AT4G21910.3 | Genomic | mRNA | CDS | Protein
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| Sampling |
Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ.
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4) |
| Comparation |
Legends:
Col: wild type, indicates the ratio of expression in senescing leaves/green leaves.
NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type.
CD: Cell Death, ratio of starved cell suspension culture/control.
Genes showing at least 3 fold (ratio) up regulation during leaf senescence. |
miRNA Interaction  | |
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| Details | | target: AT4G21910.1
miRNA: ath-miR395a
miRNA: ath-miR395a
mfe: -30.5 kcal/mol
p-value: 0.004101
position: 722
target 5' U G C U 3'
GGUU CCCCGAGCG CUUCA
UCAA GGGGUUUGU GAAGU
miRNA 3' C G C 5'
target: AT4G21910.1
miRNA: ath-miR395b
miRNA: ath-miR395b
mfe: -30.9 kcal/mol
p-value: 0.012257
position: 722
target 5' U G C U 3'
GGUU CCCCGAGCG CUUCA
UCAG GGGGUUUGU GAAGU
miRNA 3' C G C 5'
target: AT4G21910.1
miRNA: ath-miR395c
miRNA: ath-miR395c
mfe: -30.9 kcal/mol
p-value: 0.007851
position: 722
target 5' U G C U 3'
GGUU CCCCGAGCG CUUCA
UCAG GGGGUUUGU GAAGU
miRNA 3' C G C 5'
target: AT4G21910.1
miRNA: ath-miR395d
miRNA: ath-miR395d
mfe: -30.5 kcal/mol
p-value: 0.007134
position: 722
target 5' U G C U 3'
GGUU CCCCGAGCG CUUCA
UCAA GGGGUUUGU GAAGU
miRNA 3' C G C 5'
target: AT4G21910.1
miRNA: ath-miR395e
miRNA: ath-miR395e
mfe: -30.5 kcal/mol
p-value: 0.004880
position: 722
target 5' U G C U 3'
GGUU CCCCGAGCG CUUCA
UCAA GGGGUUUGU GAAGU
miRNA 3' C G C 5'
target: AT4G21910.1
miRNA: ath-miR395f
miRNA: ath-miR395f
mfe: -30.9 kcal/mol
p-value: 0.010398
position: 722
target 5' U G C U 3'
GGUU CCCCGAGCG CUUCA
UCAG GGGGUUUGU GAAGU
miRNA 3' C G C 5'
target: AT4G21910.1
miRNA: ath-miR782
miRNA: ath-miR782
mfe: -24.4 kcal/mol
p-value: 0.030303
position: 923
target 5' G U C C G 3'
GAGA CG UCCAAGGU UUUG
UUCU GU AGGUUCCA AAAC
miRNA 3' U C A 5'
target: AT4G21910.2
miRNA: ath-miR395a
miRNA: ath-miR395a
mfe: -30.5 kcal/mol
p-value: 0.004025
position: 698
target 5' U G C U 3'
GGUU CCCCGAGCG CUUCA
UCAA GGGGUUUGU GAAGU
miRNA 3' C G C 5'
target: AT4G21910.2
miRNA: ath-miR395b
miRNA: ath-miR395b
mfe: -30.9 kcal/mol
p-value: 0.012089
position: 698
target 5' U G C U 3'
GGUU CCCCGAGCG CUUCA
UCAG GGGGUUUGU GAAGU
miRNA 3' C G C 5'
target: AT4G21910.2
miRNA: ath-miR395c
miRNA: ath-miR395c
mfe: -30.9 kcal/mol
p-value: 0.007717
position: 698
target 5' U G C U 3'
GGUU CCCCGAGCG CUUCA
UCAG GGGGUUUGU GAAGU
miRNA 3' C G C 5'
target: AT4G21910.2
miRNA: ath-miR395d
miRNA: ath-miR395d
mfe: -30.5 kcal/mol
p-value: 0.007037
position: 698
target 5' U G C U 3'
GGUU CCCCGAGCG CUUCA
UCAA GGGGUUUGU GAAGU
miRNA 3' C G C 5'
target: AT4G21910.2
miRNA: ath-miR395e
miRNA: ath-miR395e
mfe: -30.5 kcal/mol
p-value: 0.004795
position: 698
target 5' U G C U 3'
GGUU CCCCGAGCG CUUCA
UCAA GGGGUUUGU GAAGU
miRNA 3' C G C 5'
target: AT4G21910.2
miRNA: ath-miR395f
miRNA: ath-miR395f
mfe: -30.9 kcal/mol
p-value: 0.010241
position: 698
target 5' U G C U 3'
GGUU CCCCGAGCG CUUCA
UCAG GGGGUUUGU GAAGU
miRNA 3' C G C 5'
target: AT4G21910.2
miRNA: ath-miR782
miRNA: ath-miR782
mfe: -24.4 kcal/mol
p-value: 0.029914
position: 899
target 5' G U C C G 3'
GAGA CG UCCAAGGU UUUG
UUCU GU AGGUUCCA AAAC
miRNA 3' U C A 5'
target: AT4G21910.3
miRNA: ath-miR395a
miRNA: ath-miR395a
mfe: -30.5 kcal/mol
p-value: 0.003524
position: 661
target 5' U G C U 3'
GGUU CCCCGAGCG CUUCA
UCAA GGGGUUUGU GAAGU
miRNA 3' C G C 5'
target: AT4G21910.3
miRNA: ath-miR395b
miRNA: ath-miR395b
mfe: -30.9 kcal/mol
p-value: 0.010950
position: 661
target 5' U G C U 3'
GGUU CCCCGAGCG CUUCA
UCAG GGGGUUUGU GAAGU
miRNA 3' C G C 5'
target: AT4G21910.3
miRNA: ath-miR395c
miRNA: ath-miR395c
mfe: -30.9 kcal/mol
p-value: 0.006819
position: 661
target 5' U G C U 3'
GGUU CCCCGAGCG CUUCA
UCAG GGGGUUUGU GAAGU
miRNA 3' C G C 5'
target: AT4G21910.3
miRNA: ath-miR395d
miRNA: ath-miR395d
mfe: -30.5 kcal/mol
p-value: 0.006379
position: 661
target 5' U G C U 3'
GGUU CCCCGAGCG CUUCA
UCAA GGGGUUUGU GAAGU
miRNA 3' C G C 5'
target: AT4G21910.3
miRNA: ath-miR395e
miRNA: ath-miR395e
mfe: -30.5 kcal/mol
p-value: 0.004233
position: 661
target 5' U G C U 3'
GGUU CCCCGAGCG CUUCA
UCAA GGGGUUUGU GAAGU
miRNA 3' C G C 5'
target: AT4G21910.3
miRNA: ath-miR395f
miRNA: ath-miR395f
mfe: -30.9 kcal/mol
p-value: 0.009182
position: 661
target 5' U G C U 3'
GGUU CCCCGAGCG CUUCA
UCAG GGGGUUUGU GAAGU
miRNA 3' C G C 5'
target: AT4G21910.3
miRNA: ath-miR782
miRNA: ath-miR782
mfe: -24.4 kcal/mol
p-value: 0.027268
position: 862
target 5' G U C C G 3'
GAGA CG UCCAAGGU UUUG
UUCU GU AGGUUCCA AAAC
miRNA 3' U C A 5'
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| Ortholog Group | |
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| Ortholog Groups: OG5_139502 | |
| Cross Link | |
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