Basic information
Locus name	AT5G62680
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Nutrient recycling
Effect for Senescence	unclear
Gene Description	proton-dependent oligopeptide transport (POT) family protein
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85
Gene Ontology	biological process transport cellular component membrane molecular function transporter activity
Pathway	Reactome REACT_15518 REACT_19419
Sequence	AT5G62680.1 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. D/L: ratio of DARK 5d/control. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
miRNA Interaction
Details	target: AT5G62680.1  miRNA: ath-miR173 miRNA: ath-miR173 mfe: -30.2 kcal/mol  p-value: 0.002764  position:  866  target 5' U                    U 3'             UGA UUUUCUUUGCGGGCGA              ACU AAGAGAGACGUUCGCU   miRNA  3' C   A                U 5'  target: AT5G62680.1  miRNA: ath-miR870 miRNA: ath-miR870 mfe: -21.3 kcal/mol  p-value: 0.138231  position:  954  target 5' C                     A 3'             GAUC AAGAAACGC GGAUUA              CUAG UUCUUUGUG UUUAAU   miRNA  3'      C         G        5'
Ortholog Group
Ortholog Groups: OG5_141643	Accession Taxon NP_173322 Arabidopsis thaliana NP_201074 ( AT5G62680 ) Arabidopsis thaliana NP_566896 Arabidopsis thaliana NP_001050937 Oryza sativa Japonica Group NP_001067377 Oryza sativa Japonica Group NP_001067378 Oryza sativa Japonica Group 29822.m003392 Ricinus communis 29822.m003447 Ricinus communis 29822.m003462 Ricinus communis 29822.m003463 Ricinus communis 29822.m003464 Ricinus communis 29822.m003465 Ricinus communis 29822.m003466 Ricinus communis 30147.m014060 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR11654 0.0 4 615 IPR000109 Proton-dependent oligopeptide transporter family SUPERFAMILY SSF103473 6.0E-19 62 264 IPR016196 Major facilitator superfamily domain, general substrate transporter Pfam PF00854 2.8E-56 117 519 IPR000109 Proton-dependent oligopeptide transporter family SUPERFAMILY SSF103473 6.0E-19 352 591 IPR016196 Major facilitator superfamily domain, general substrate transporter
Subcellular Localization
Localization	plasma membrane
Evidence	SUBAcon
Pubmed ID	23180787