Basic information
Locus name	AT1G12940
Alias	ATNRT2.5
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Nutrient recycling
Effect for Senescence	unclear
Gene Description	nitrate transporter2.5 (ATNRT2.5); FUNCTIONS IN: nitrate transmembrane transporter activity. Gene expression is increased during leaf senescence.
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85 2: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process transmembrane transport cellular component integral to membrane
Sequence	AT1G12940.1 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
Ortholog Group
Ortholog Groups: OG5_130127	Accession Taxon NP_172288 Arabidopsis thaliana NP_172289 Arabidopsis thaliana NP_172754 ( AT1G12940 ) Arabidopsis thaliana NP_190092 Arabidopsis thaliana NP_200885 Arabidopsis thaliana NP_200886 Arabidopsis thaliana CMG018C Cyanidioschyzon merolae strain 10D 130019 Chlamydomonas reinhardtii 192088 Chlamydomonas reinhardtii 192090 Chlamydomonas reinhardtii ACO65721 Micromonas sp. RCC299 ACO68372 Micromonas sp. RCC299 ACO68767 Micromonas sp. RCC299 ACO68768 Micromonas sp. RCC299 NP_001044003 Oryza sativa Japonica Group NP_001045658 Oryza sativa Japonica Group NP_001045659 Oryza sativa Japonica Group estExt_fgenesh1_pg.C_Chr_10.00010071 Ostreococcus tauri e_gw1.106.1.1 Physcomitrella patens subsp. patens e_gw1.12.209.1 Physcomitrella patens subsp. patens e_gw1.254.46.1 Physcomitrella patens subsp. patens e_gw1.449.10.1 Physcomitrella patens subsp. patens e_gw1.75.88.1 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_1000110 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_120035 Physcomitrella patens subsp. patens fgenesh1_pg.scaffold_100000126 Physcomitrella patens subsp. patens 27504.m000614 Ricinus communis 29589.m001223 Ricinus communis 29589.m001224 Ricinus communis 29589.m001225 Ricinus communis 30078.m002302 Ricinus communis estExt_Genewise1.C_chr_30231 Thalassiosira pseudonana CCMP1335 estExt_gwp_gw1.C_chr_20485 Thalassiosira pseudonana CCMP1335 estExt_thaps1_ua_kg.C_chr_70193 Thalassiosira pseudonana CCMP1335 XP_002955217 Volvox carteri f. nagariensis XP_002955218 Volvox carteri f. nagariensis XP_002955238 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description SUPERFAMILY SSF103473 3.9E-46 39 444 IPR016196 Major facilitator superfamily domain, general substrate transporter PANTHER PTHR24003 7.8E-114 40 494 No hit NA Pfam PF07690 9.0E-18 51 407 IPR011701 Major facilitator superfamily
Subcellular Localization
Localization	plasma membrane
Evidence	SUBAcon
Pubmed ID	23180787