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Locus name | AT5G26340 |
Organism | Arabidopsis thaliana |
Taxonomic identifier | [NCBI] |
Function category | Nutrient recycling |
Effect for Senescence | unclear |
Gene Description | hexose transporter, putative strong similarity to hexose transporter, Lycopersicon esculentum, GI:5734440; contains Pfam profile PF00083: major facilitator superfamily protein |
Evidence | Genomic evidence:microarray data [Ref 1] |
References | 1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJComparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.Plant J. 2005 May;42(4):567-85 |
Gene Ontology | |
Pathway | |
Sequence | AT5G26340.1 | Genomic | mRNA | CDS | Protein
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Sampling |
Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4) |
Comparation |
Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. D/L: ratio of DARK 5d/control. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence. |
miRNA Interaction | |
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Details | | target: AT5G26340.1 miRNA: ath-miR2111a miRNA: ath-miR2111a mfe: -24.2 kcal/mol p-value: 0.055933
position: 664 target 5' G G G G U 3' GAG UU GGGAUG AGGUUA UUU GA UCCUAC UCUAAU miRNA 3' A G G G 5'
target: AT5G26340.1 miRNA: ath-miR2111b miRNA: ath-miR2111b mfe: -24.2 kcal/mol p-value: 0.053856
position: 664 target 5' G G G G U 3' GAG UU GGGAUG AGGUUA UUU GA UCCUAC UCUAAU miRNA 3' A G G G 5'
target: AT5G26340.1 miRNA: ath-miR837-5p miRNA: ath-miR837-5p mfe: -22.6 kcal/mol p-value: 0.083401
position: 1690 target 5' A G A 3' GAGA UGAACAAGAGG UGGU CUUU GCUUGUUCUUU ACUA miRNA 3' A G 5'
target: AT5G26340.1 miRNA: ath-miR857 miRNA: ath-miR857 mfe: -20.7 kcal/mol p-value: 0.092133
position: 89 target 5' U A A U 3' UGCG CUUCGGCG ACGGAG AUGU GAAGUUGU UGUUUU miRNA 3' U G A 5'
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Ortholog Group | |
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Ortholog Groups: OG5_126798 | |
Cross Link | |
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Localization | plasma membrane |
Evidence | SUBAcon |
Pubmed ID | 23180787 |