Basic information
GenBank ID	U68218
Alias	LSC680
Organism	Rapeseed (Brassica napus)
Taxonomic identifier	[NCBI]
Function category	Nucleic acid degradation
Effect for Senescence	unclear
Gene Description	ATP sulphurylase;upregulated in senescing leaves
Evidence	Molecular evidence:SSH [Ref 1]
References	1: Buchanan-Wollaston V, Ainsworth C Leaf senescence in Brassica napus: cloning of senescence related genes by subtractive hybridisation. Plant Mol. Biol. 1997 Mar;33(5):821-34
Gene Ontology	biological process sulfate assimilation molecular function sulfate adenylyltransferase (ATP) activity
Pathway	KEGG map00230 (EC 2.7.7.4) map00450 (EC 2.7.7.4) map00920 (EC 2.7.7.4) MetaCyc PWY-5278 Reactome REACT_13433
Sequence	U68218.1 | mRNA | CDS | Protein
miRNA Interaction
Details	target: U68218.1  miRNA: bna-miR395a miRNA: bna-miR395a mfe: -34.4 kcal/mol  p-value: 0.000678  position: 315  target 5' C              U     U  3'             GAGUUCCUCCAAAC CUUCA                 CUCAAGGGGGUUUG GAAGU      miRNA  3'                U     C  5'  target: U68218.1  miRNA: bna-miR395b miRNA: bna-miR395b mfe: -34.4 kcal/mol  p-value: 0.001246  position: 315  target 5' C              U     U  3'             GAGUUCCUCCAAAC CUUCA                 CUCAAGGGGGUUUG GAAGU      miRNA  3'                U     C  5'  target: U68218.1  miRNA: bna-miR395c miRNA: bna-miR395c mfe: -34.4 kcal/mol  p-value: 0.000534  position: 315  target 5' C              U     U  3'             GAGUUCCUCCAAAC CUUCA                 CUCAAGGGGGUUUG GAAGU      miRNA  3'                U     C  5'
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR24799 0.0 1 459 No hit NA SUPERFAMILY SSF88697 2.0E-47 45 215 IPR015947 PUA-like domain Pfam PF14306 1.6E-44 46 209 IPR025980 ATP-sulfurylase PUA-like domain TIGRFAM TIGR00339 2.4E-133 48 440 IPR002650 Sulphate adenylyltransferase Pfam PF01747 6.3E-60 218 442 IPR024951 Sulphate adenylyltransferase catalytic domain SUPERFAMILY SSF52374 1.4E-69 219 442 No hit NA