Basic information
Locus name	LOC_Os09g36200
Alias	OsSGR
Organism	Rice (Oryza sativa)
Taxonomic identifier	[NCBI]
Function category	Chlorophyll degradation
Effect for Senescence	promote
Gene Description	At4g22920 (AtNYE1) is the most similar Arabidopsis protein to LOC_Os09g36200.
Evidence	Molecular evidence:Northern [Ref 1]
References	1: Armstead I, Donnison I, Aubry S, Harper J, H_rtensteiner S, James C, Mani J, Moffet M, Ougham H, Roberts L, Thomas A, Weeden N, Thomas H, King I Cross-species identification of Mendel's I locus. Science 2007 Jan 5;315(5808):73
Sequence	LOC_OS09G36200.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: LOC_Os09g36200  miRNA: osa-miR1442 miRNA: osa-miR1442 mfe: -20.9 kcal/mol  p-value: 0.078756  position:  1734  target 5' C      G           C 3'             CGCGUC AGUGCUG GGG              GUGUAG UCAUGAU CUU   miRNA  3' U      A       A   A 5'  target: LOC_Os09g36200  miRNA: osa-miR159a miRNA: osa-miR159a mfe: -31.8 kcal/mol  p-value: 0.014128  position:  576  target 5' G   U              G C 3'             UGC GUUCCUGGGG GUG A              ACG CGAGGACCCC UAC U   miRNA  3'     U          G   G U 5'  target: LOC_Os09g36200  miRNA: osa-miR2099-3p miRNA: osa-miR2099-3p mfe: -28.3 kcal/mol  p-value: 0.007069  position:  2040  target 5' A            U      C 3'             AAUGACGCUGCG GCUUUG              UUAUUGCGAUGU CGAAAC   miRNA  3' C                   A 5'  target: LOC_Os09g36200  miRNA: osa-miR2102-5p miRNA: osa-miR2102-5p mfe: -37.3 kcal/mol  p-value: 0.007081  position:  1850  target 5' A     C              G 3'             GUGGC GCGGCGG U GCCC              CACCG CGCCGCC A CGGG   miRNA  3'       C       G A      5'  target: LOC_Os09g36200  miRNA: osa-miR2104 miRNA: osa-miR2104 mfe: -37.4 kcal/mol  p-value: 0.015194  position:  1896  target 5' A   A    U        G     A 3'             UAC GC C CAUCCCCU GCCGC              GUG CG G GUAGGGGA CGGCG   miRNA  3'        A C        G       5'  target: LOC_Os09g36200  miRNA: osa-miR414 miRNA: osa-miR414 mfe: -28.2 kcal/mol  p-value: 0.001858  position:  736  target 5' G               C   G   A 3'             GGACGA GGUGGUGG GGA UGG              CCUGCU CUACUACU CCU ACU   miRNA  3'        A                  5'  target: LOC_Os09g36200  miRNA: osa-miR444d miRNA: osa-miR444d mfe: -24.7 kcal/mol  p-value: 0.094033  position:  1678  target 5' G                    U 3'             AGC UG GAGGAGGCCACGG              UUG AC UUCUUUCGGUGUU   miRNA  3' G   A  G               5'
Ortholog Group
Ortholog Groups: OG5_141633	Accession Taxon NP_001118967 Arabidopsis thaliana NP_192928 Arabidopsis thaliana NP_567673 Arabidopsis thaliana 205911 Chlamydomonas reinhardtii ACO64122 Micromonas sp. RCC299 NP_001063758 ( LOC_Os09g36200 ) Oryza sativa Japonica Group 1300010161 Ostreococcus tauri e_gw1.157.71.1 Physcomitrella patens subsp. patens e_gw1.68.268.1 Physcomitrella patens subsp. patens e_gw1.9.219.1 Physcomitrella patens subsp. patens gw1.212.66.1 Physcomitrella patens subsp. patens 30190.m011097 Ricinus communis XP_002948199 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR31750 3.5E-122 1 274 No hit NA ProSitePatterns PS00430 NA 1 31 IPR010916 TonB box, conserved site Pfam PF12638 1.6E-62 56 210 IPR024438 Staygreen protein