Basic information
GenBank ID	AB109891
Alias	PHYA
Organism	Rice (Oryza sativa)
Taxonomic identifier	[NCBI]
Function category	Signal transduction:Light
Effect for Senescence	promote
Gene Description	delayed senescence in the triple mutants (phyA phyB phyC)
Evidence	Genetic evidence:Mutant [Ref 1]
References	1: Jumtee K, Okazawa A, Harada K, Fukusaki E, Takano M, Kobayashi A Comprehensive metabolite profiling of phyA phyB phyC triple mutants to reveal their associated metabolic phenotype in rice leaves. J. Biosci. Bioeng. 2009 Aug;108(2):151-9
Gene Ontology	biological process detection of visible light protein-tetrapyrrole linkage red, far-red light phototransduction regulation of transcription, DNA-dependent molecular function photoreceptor activity protein homodimerization activity
Pathway	Reactome REACT_1046
Sequence	AB109891.1 | mRNA | CDS | Protein
miRNA Interaction
Details	target: AB109891.1  miRNA: osa-miR172d-5p miRNA: osa-miR172d-5p mfe: -31.7 kcal/mol  p-value: 0.001683  position: 1478  target 5' U     A G            U  3'             GUGAA U UGAUGGUGCUGC                 CACUU G ACUACCACGACG      miRNA  3'       A A               5'
Ortholog Group
Ortholog Groups: OG5_136555	Accession Taxon NP_001117256 Arabidopsis thaliana NP_172428 Arabidopsis thaliana NP_179469 Arabidopsis thaliana NP_193360 Arabidopsis thaliana NP_193547 Arabidopsis thaliana NP_198433 Arabidopsis thaliana NP_001049910 Oryza sativa Japonica Group NP_001051096 ( AB109891 ) Oryza sativa Japonica Group NP_001051296 Oryza sativa Japonica Group e_gw1.13.2.1 Physcomitrella patens subsp. patens estExt_Genewise1.C_1640046 Physcomitrella patens subsp. patens estExt_Genewise1.C_2330008 Physcomitrella patens subsp. patens estExt_Genewise1.C_3270009 Physcomitrella patens subsp. patens estExt_Genewise1.C_470039 Physcomitrella patens subsp. patens estExt_fgenesh1_pg.C_910062 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_810097 Physcomitrella patens subsp. patens 29693.m002076 Ricinus communis 29889.m003301 Ricinus communis 30128.m008997 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PIRSF PIRSF000084 0.0 1 1128 IPR012129 Phytochrome A/B/C/D/E Pfam PF08446 1.4E-37 70 186 IPR013654 PAS fold-2 SUPERFAMILY SSF55785 3.0E-23 75 187 IPR000014 PAS domain PRINTS PR01033 3.9E-108 134 156 IPR001294 Phytochrome SUPERFAMILY SSF55781 3.7E-53 199 401 No hit NA ProSiteProfiles PS50046 62.1 219 394 IPR016132 Phytochrome chromophore attachment domain SMART SM00065 2.2E-11 219 414 IPR003018 GAF domain Pfam PF01590 3.4E-37 220 402 IPR003018 GAF domain PRINTS PR01033 3.9E-108 234 253 IPR001294 Phytochrome PRINTS PR01033 3.9E-108 319 340 IPR001294 Phytochrome ProSitePatterns PS00245 NA 319 328 IPR013516 Phytochrome chromophore binding site SUPERFAMILY SSF55781 2.8E-52 412 590 No hit NA Pfam PF00360 7.7E-67 415 592 IPR013515 Phytochrome, central region PRINTS PR01033 3.9E-108 435 455 IPR001294 Phytochrome PRINTS PR01033 3.9E-108 520 539 IPR001294 Phytochrome PRINTS PR01033 3.9E-108 553 571 IPR001294 Phytochrome PANTHER PTHR24423 2.1E-25 615 1123 No hit NA ProSiteProfiles PS50112 19.0 620 690 IPR000014 PAS domain SMART SM00091 1.2E-7 622 688 IPR000014 PAS domain Pfam PF00989 1.6E-20 623 737 IPR013767 PAS fold PRINTS PR01033 3.9E-108 623 639 IPR001294 Phytochrome SUPERFAMILY SSF55785 7.3E-17 626 733 IPR000014 PAS domain TIGRFAM TIGR00229 3.9E-12 627 741 IPR000014 PAS domain PRINTS PR01033 3.9E-108 642 657 IPR001294 Phytochrome PRINTS PR01033 3.9E-108 715 732 IPR001294 Phytochrome PRINTS PR01033 3.9E-108 735 755 IPR001294 Phytochrome ProSiteProfiles PS50112 13.5 750 834 IPR000014 PAS domain SMART SM00091 0.1 752 821 IPR000014 PAS domain Pfam PF00989 5.9E-25 753 875 IPR013767 PAS fold SUPERFAMILY SSF55785 8.6E-11 767 873 IPR000014 PAS domain SMART SM00388 4.0E-4 897 962 IPR003661 Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain Pfam PF00512 5.3E-7 903 953 IPR003661 Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain ProSiteProfiles PS50109 33.1 904 1124 IPR005467 Signal transduction histidine kinase, core SUPERFAMILY SSF55874 2.1E-12 962 1118 IPR003594 Histidine kinase-like ATPase, ATP-binding domain SMART SM00387 4.7E-12 1011 1124 IPR003594 Histidine kinase-like ATPase, ATP-binding domain Pfam PF02518 3.7E-10 1012 1121 IPR003594 Histidine kinase-like ATPase, ATP-binding domain