Basic information
GenBank ID	AB018442
Alias	PHYC
Organism	Rice (Oryza sativa)
Taxonomic identifier	[NCBI]
Function category	Signal transduction:Light
Effect for Senescence	promote
Gene Description	delayed senescence in the triple mutants(phyA phyB phyC)
Evidence	Genetic evidence:Mutant [Ref 1]
References	1: Jumtee K, Okazawa A, Harada K, Fukusaki E, Takano M, Kobayashi A Comprehensive metabolite profiling of phyA phyB phyC triple mutants to reveal their associated metabolic phenotype in rice leaves. J. Biosci. Bioeng. 2009 Aug;108(2):151-9
Gene Ontology	biological process detection of visible light protein-tetrapyrrole linkage red, far-red light phototransduction regulation of transcription, DNA-dependent molecular function photoreceptor activity protein homodimerization activity
Pathway	Reactome REACT_1046
Sequence	AB018442.1 | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_136555	Accession Taxon NP_001117256 Arabidopsis thaliana NP_172428 Arabidopsis thaliana NP_179469 Arabidopsis thaliana NP_193360 Arabidopsis thaliana NP_193547 Arabidopsis thaliana NP_198433 Arabidopsis thaliana NP_001049910 Oryza sativa Japonica Group NP_001051096 Oryza sativa Japonica Group NP_001051296 ( AB018442 ) Oryza sativa Japonica Group e_gw1.13.2.1 Physcomitrella patens subsp. patens estExt_Genewise1.C_1640046 Physcomitrella patens subsp. patens estExt_Genewise1.C_2330008 Physcomitrella patens subsp. patens estExt_Genewise1.C_3270009 Physcomitrella patens subsp. patens estExt_Genewise1.C_470039 Physcomitrella patens subsp. patens estExt_fgenesh1_pg.C_910062 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_810097 Physcomitrella patens subsp. patens 29693.m002076 Ricinus communis 29889.m003301 Ricinus communis 30128.m008997 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PIRSF PIRSF000084 0.0 1 1137 IPR012129 Phytochrome A/B/C/D/E Pfam PF08446 3.7E-41 68 184 IPR013654 PAS fold-2 SUPERFAMILY SSF55785 3.8E-22 73 185 IPR000014 PAS domain PRINTS PR01033 2.3E-104 132 154 IPR001294 Phytochrome SUPERFAMILY SSF55781 1.6E-52 197 397 No hit NA ProSiteProfiles PS50046 65.9 217 390 IPR016132 Phytochrome chromophore attachment domain SMART SM00065 4.1E-13 217 410 IPR003018 GAF domain Pfam PF01590 3.6E-40 218 399 IPR003018 GAF domain PRINTS PR01033 2.3E-104 232 251 IPR001294 Phytochrome PRINTS PR01033 2.3E-104 317 338 IPR001294 Phytochrome ProSitePatterns PS00245 NA 317 326 IPR013516 Phytochrome chromophore binding site SUPERFAMILY SSF55781 2.9E-61 408 586 No hit NA Pfam PF00360 6.7E-76 411 589 IPR013515 Phytochrome, central region PRINTS PR01033 2.3E-104 430 450 IPR001294 Phytochrome PRINTS PR01033 2.3E-104 515 534 IPR001294 Phytochrome PRINTS PR01033 2.3E-104 549 567 IPR001294 Phytochrome PANTHER PTHR24423 9.7E-19 600 1116 No hit NA ProSiteProfiles PS50112 18.3 620 690 IPR000014 PAS domain SMART SM00091 3.6E-7 622 688 IPR000014 PAS domain Pfam PF00989 1.9E-21 623 737 IPR013767 PAS fold PRINTS PR01033 2.3E-104 623 639 IPR001294 Phytochrome SUPERFAMILY SSF55785 1.7E-11 625 733 IPR000014 PAS domain TIGRFAM TIGR00229 7.1E-8 627 738 IPR000014 PAS domain PRINTS PR01033 2.3E-104 642 657 IPR001294 Phytochrome PRINTS PR01033 2.3E-104 715 732 IPR001294 Phytochrome PRINTS PR01033 2.3E-104 735 755 IPR001294 Phytochrome ProSiteProfiles PS50112 10.9 750 805 IPR000014 PAS domain SMART SM00091 2.7 752 822 IPR000014 PAS domain Pfam PF00989 7.5E-18 753 875 IPR013767 PAS fold SUPERFAMILY SSF55785 1.5E-7 767 872 IPR000014 PAS domain SMART SM00388 5.4E-6 898 961 IPR003661 Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain Pfam PF00512 5.9E-8 902 960 IPR003661 Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain ProSiteProfiles PS50109 33.4 904 1124 IPR005467 Signal transduction histidine kinase, core SUPERFAMILY SSF55874 7.8E-12 970 1121 IPR003594 Histidine kinase-like ATPase, ATP-binding domain Pfam PF02518 3.2E-8 1009 1114 IPR003594 Histidine kinase-like ATPase, ATP-binding domain SMART SM00387 3.3E-9 1009 1124 IPR003594 Histidine kinase-like ATPase, ATP-binding domain