Basic information
Locus name	AT5G23430
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	Progressively up-regulated during the 6 d of darkness
Evidence	Molecular evidence:Real-Time PCR [Ref 1]
References	1: Keech O, Pesquet E, Gutierrez L, Ahad A, Bellini C, Smith SM, Gardestr_m P Leaf senesce Plant Physiol. 2010 Dec;154(4):1710-20
Gene Ontology	biological process microtubule severing cellular component katanin complex molecular function microtubule binding protein binding
Sequence	AT5G23430.1 | Genomic | mRNA | CDS | Protein AT5G23430.2 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_129945	Accession Taxon NP_172582 Arabidopsis thaliana NP_176316 Arabidopsis thaliana NP_197734 Arabidopsis thaliana NP_568194 Arabidopsis thaliana NP_851064 ( AT5G23430 ) Arabidopsis thaliana 80954 Chlamydomonas reinhardtii ACO63197 Micromonas sp. RCC299 NP_001044436 Oryza sativa Japonica Group NP_001054267 Oryza sativa Japonica Group NP_001064946 Oryza sativa Japonica Group e_gw1.101.26.1 Physcomitrella patens subsp. patens gw1.9.50.1 Physcomitrella patens subsp. patens 29917.m001945 Ricinus communis 30221.m002234 Ricinus communis XP_002954158 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR19845 1.5E-246 1 835 IPR026962 Katanin p80 subunit B1 SMART SM00320 7.5E-4 5 45 IPR001680 WD40 repeat SUPERFAMILY SSF50978 1.2E-69 6 294 IPR017986 WD40-repeat-containing domain Pfam PF00400 1.5E-4 9 44 IPR001680 WD40 repeat ProSiteProfiles PS50082 10.5 12 54 IPR001680 WD40 repeat ProSiteProfiles PS50294 57.2 12 245 IPR017986 WD40-repeat-containing domain SMART SM00320 2.3E-4 48 87 IPR001680 WD40 repeat Pfam PF00400 5.9E-5 52 87 IPR001680 WD40 repeat ProSiteProfiles PS50082 14.8 55 96 IPR001680 WD40 repeat SMART SM00320 1.6E-9 90 129 IPR001680 WD40 repeat Pfam PF00400 2.0E-10 92 129 IPR001680 WD40 repeat ProSiteProfiles PS50082 15.0 97 138 IPR001680 WD40 repeat PRINTS PR00320 3.1E-7 116 130 IPR020472 G-protein beta WD-40 repeat SMART SM00320 1.0E-11 132 171 IPR001680 WD40 repeat Pfam PF00400 2.1E-11 135 171 IPR001680 WD40 repeat ProSiteProfiles PS50082 17.5 139 180 IPR001680 WD40 repeat PRINTS PR00320 3.1E-7 158 172 IPR020472 G-protein beta WD-40 repeat ProSitePatterns PS00678 NA 158 172 IPR019775 WD40 repeat, conserved site SMART SM00320 9.1E-10 174 213 IPR001680 WD40 repeat Pfam PF00400 4.0E-10 175 213 IPR001680 WD40 repeat ProSiteProfiles PS50082 16.4 181 222 IPR001680 WD40 repeat PRINTS PR00320 3.1E-7 200 214 IPR020472 G-protein beta WD-40 repeat ProSitePatterns PS00678 NA 200 214 IPR019775 WD40 repeat, conserved site SMART SM00320 2.1 216 254 IPR001680 WD40 repeat Pfam PF13925 2.1E-44 674 832 No hit NA