Basic information
Locus name	AT1G06820
Alias	CCR2
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	carotenoid isomerase
Effect for Senescence	unclear
Gene Description	Encodes carotenoid isomerase. Catalyzes the isomerization of poly-cis-carotenoids to all-trans-carotenoids.
Evidence	Molecular evidence:Blast search [Ref 1]
References	1: Snowden KC, Simkin AJ, Janssen BJ, Templeton KR, Loucas HM, Simons JL, Karunairetnam S, Gleave AP, Clark DG, Klee HJ The Decreased apical dominance1/Petunia hybrida CAROTENOID CLEAVAGE DIOXYGENASE8 gene affects branch production and plays a role in leaf senescence, root growth, and flower development. Plant Cell 2005 Mar;17(3):746-59
Gene Ontology	biological process carotenoid biosynthetic process molecular function isomerase activity
Pathway	KEGG map00040 (EC 5.-.-.-) map00100 (EC 5.-.-.-) map00540 (EC 5.-.-.-) map00906 (EC 5.-.-.-)
Sequence	AT1G06820.1 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_131173	Accession Taxon NP_172167 ( AT1G06820 ) Arabidopsis thaliana CMN268C Cyanidioschyzon merolae strain 10D 196597 Chlamydomonas reinhardtii ACO68071 Micromonas sp. RCC299 ACO68575 Micromonas sp. RCC299 NP_001068127 Oryza sativa Japonica Group 0600010309 Ostreococcus tauri estExt_gwp_gw1.C_2100072 Physcomitrella patens subsp. patens fgenesh1_pg.scaffold_166000020 Physcomitrella patens subsp. patens 29333.m001086 Ricinus communis fgenesh1_pg.C_chr_15000244 Thalassiosira pseudonana CCMP1335 XP_002952259 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR10668 1.8E-281 71 582 No hit NA SUPERFAMILY SSF51905 5.0E-54 78 406 No hit NA TIGRFAM TIGR02730 1.8E-279 78 572 IPR014101 Carotene isomerase Pfam PF13450 2.6E-11 82 143 No hit NA SUPERFAMILY SSF51905 5.0E-54 531 570 No hit NA
Subcellular Localization
Localization	plastid
Evidence	SUBAcon
Pubmed ID	23180787