Basic information
Locus name	AT2G28350
Alias	ARF10
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Hormone response pathway:Auxin
Effect for Senescence	unclear
Gene Description	Involved in root cap cell differentiation. protein_coding AUXIN RESPONSE FACTOR 10 (ARF10)
Evidence	Molecular evidence:Blast search [Ref 1]
References	1: Snowden KC, Simkin AJ, Janssen BJ, Templeton KR, Loucas HM, Simons JL, Karunairetnam S, Gleave AP, Clark DG, Klee HJ The Decreased apical dominance1/Petunia hybrida CAROTENOID CLEAVAGE DIOXYGENASE8 gene affects branch production and plays a role in leaf senescence, root growth, and flower development. Plant Cell 2005 Mar;17(3):746-59
Gene Ontology	biological process regulation of transcription, DNA-dependent cellular component nucleus molecular function DNA binding
Sequence	AT2G28350.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: AT2G28350.1  miRNA: ath-miR160a miRNA: ath-miR160a mfe: -44.5 kcal/mol  p-value: 0.000193  position: 1328  target 5' A  A                 A  3'             GG AUACAGGGAGCCAGGCA                 CC UAUGUCCCUCGGUCCGU      miRNA  3' A  G                    5'  target: AT2G28350.1  miRNA: ath-miR160b miRNA: ath-miR160b mfe: -44.5 kcal/mol  p-value: 0.000329  position: 1328  target 5' A  A                 A  3'             GG AUACAGGGAGCCAGGCA                 CC UAUGUCCCUCGGUCCGU      miRNA  3' A  G                    5'  target: AT2G28350.1  miRNA: ath-miR160c miRNA: ath-miR160c mfe: -44.5 kcal/mol  p-value: 0.000053  position: 1328  target 5' A  A                 A  3'             GG AUACAGGGAGCCAGGCA                 CC UAUGUCCCUCGGUCCGU      miRNA  3' A  G                    5'
Ortholog Group
Ortholog Groups: OG5_150287	Accession Taxon NP_180402 ( AT2G28350 ) Arabidopsis thaliana NP_567841 Arabidopsis thaliana NP_001047488 Oryza sativa Japonica Group NP_001058399 Oryza sativa Japonica Group NP_001064872 Oryza sativa Japonica Group e_gw1.279.55.1 Physcomitrella patens subsp. patens estExt_fgenesh1_pm.C_3390006 Physcomitrella patens subsp. patens 27494.m000045 Ricinus communis 27538.m000327 Ricinus communis 30078.m002329 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR31384 9.8E-196 4 547 No hit NA SUPERFAMILY SSF101936 2.2E-29 110 216 IPR015300 DNA-binding pseudobarrel domain Pfam PF02362 1.9E-22 115 216 IPR003340 B3 DNA binding domain ProSiteProfiles PS50863 13.2 115 217 IPR003340 B3 DNA binding domain SMART SM01019 1.2E-21 115 217 IPR003340 B3 DNA binding domain Pfam PF06507 1.2E-33 277 360 IPR010525 Auxin response factor Coils Coil NA 542 563 No hit NA Pfam PF02309 1.1E-9 579 656 IPR003311 AUX/IAA protein ProSiteProfiles PS50962 21.2 581 660 IPR011525 Aux/IAA-ARF-dimerisation
Subcellular Localization
Localization	nucleus
Evidence	SUBAcon
Pubmed ID	23180787