Basic information
Locus name	AT3G04870
Alias	SPC1/PDE181
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Chlorophyll biosynthesis
Effect for Senescence	unclear
Gene Description	Involved in the biosynthesis of carotenes and xanthophylls, reduces zeta-carotene to lycopene.auxin polar transport, carotenoid biosynthetic process,
Evidence	Molecular evidence:Blast search [Ref 1]
References	1: Snowden KC, Simkin AJ, Janssen BJ, Templeton KR, Loucas HM, Simons JL, Karunairetnam S, Gleave AP, Clark DG, Klee HJ The Decreased apical dominance1/Petunia hybrida CAROTENOID CLEAVAGE DIOXYGENASE8 gene affects branch production and plays a role in leaf senescence, root growth, and flower development. Plant Cell 2005 Mar;17(3):746-59
Gene Ontology	biological process carotenoid biosynthetic process oxidation-reduction process molecular function carotene 7,8-desaturase activity oxidoreductase activity
Pathway	KEGG map00906 (EC 1.14.99.30) MetaCyc PWY-5942 PWY-6286 PWY-6287
Sequence	AT3G04870.1 | Genomic | mRNA | CDS | Protein AT3G04870.2 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_144965	Accession Taxon NP_187138 Arabidopsis thaliana NP_974222 ( AT3G04870 ) Arabidopsis thaliana CMT061C Cyanidioschyzon merolae strain 10D 182457 Chlamydomonas reinhardtii NP_001059145 Oryza sativa Japonica Group estExt_gwp_gw1.C_2110084 Physcomitrella patens subsp. patens fgenesh1_pm.scaffold_277000002 Physcomitrella patens subsp. patens fgenesh2_pg.scaffold_149000078 Physcomitrella patens subsp. patens 30128.m008623 Ricinus communis e_gw1.14.51.1 Thalassiosira pseudonana CCMP1335 XP_002954228 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR10742 5.7E-282 22 544 No hit NA SUPERFAMILY SSF51905 2.1E-54 56 378 No hit NA PRINTS PR00419 1.4E-5 58 80 No hit NA TIGRFAM TIGR02732 8.1E-270 58 531 IPR014103 Zeta-carotene desaturase Pfam PF01593 7.8E-74 66 530 IPR002937 Amine oxidase PRINTS PR00419 1.4E-5 81 94 No hit NA SUPERFAMILY SSF51905 2.1E-54 491 532 No hit NA
Subcellular Localization
Localization	plastid
Evidence	SUBAcon
Pubmed ID	23180787