Basic information
Locus name	AT3G10230
Alias	LYC
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	LYC (LYCOPENE CYCLASE).Encodes a protein with lycopene β-cyclase activity.
Evidence	Molecular evidence:Blast search [Ref 1]
References	1: Snowden KC, Simkin AJ, Janssen BJ, Templeton KR, Loucas HM, Simons JL, Karunairetnam S, Gleave AP, Clark DG, Klee HJ The Decreased apical dominance1/Petunia hybrida CAROTENOID CLEAVAGE DIOXYGENASE8 gene affects branch production and plays a role in leaf senescence, root growth, and flower development. Plant Cell 2005 Mar;17(3):746-59
Gene Ontology	biological process carotenoid biosynthetic process molecular function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
Sequence	AT3G10230.1 | Genomic | mRNA | CDS | Protein AT3G10230.2 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_143063	Accession Taxon NP_001078131 Arabidopsis thaliana NP_187634 ( AT3G10230 ) Arabidopsis thaliana CMK050C Cyanidioschyzon merolae strain 10D ACO66866 Micromonas sp. RCC299 NP_001046151 Oryza sativa Japonica Group e_gw1.14.00.92.1 Ostreococcus tauri e_gw1.160.17.1 Physcomitrella patens subsp. patens e_gw1.55.155.1 Physcomitrella patens subsp. patens 29941.m000224 Ricinus communis thaps1_ua_kg.chr_2000231 Thalassiosira pseudonana CCMP1335 XP_002957303 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR32512 0.0 1 501 No hit NA SUPERFAMILY SSF51905 2.8E-32 79 243 No hit NA Pfam PF05834 2.7E-134 84 478 IPR008671 Lycopene cyclase-type, FAD-binding TIGRFAM TIGR01790 3.9E-153 84 481 IPR010108 Lycopene cyclase, beta/epsilon SUPERFAMILY SSF51905 2.8E-32 338 466 No hit NA
Subcellular Localization
Localization	plastid
Evidence	SUBAcon
Pubmed ID	23180787