Basic information
Locus name	AT5G25150
Alias	TAF5
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Transcription regulation
Effect for Senescence	unclear
Gene Description	Encodes a putative TATA-binding-protein associated factor TAF5. TAFs are subunits of the general transcription factor IID
Evidence	Molecular evidence:Blast search [Ref 1]
References	1: Snowden KC, Simkin AJ, Janssen BJ, Templeton KR, Loucas HM, Simons JL, Karunairetnam S, Gleave AP, Clark DG, Klee HJ The Decreased apical dominance1/Petunia hybrida CAROTENOID CLEAVAGE DIOXYGENASE8 gene affects branch production and plays a role in leaf senescence, root growth, and flower development. Plant Cell 2005 Mar;17(3):746-59
Gene Ontology	molecular function protein binding
Sequence	AT5G25150.1 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_128980	Accession Taxon NP_197897 ( AT5G25150 ) Arabidopsis thaliana CMI209C Cyanidioschyzon merolae strain 10D 150691 Chlamydomonas reinhardtii ACO61456 Micromonas sp. RCC299 ACO61457 Micromonas sp. RCC299 NP_001058217 Oryza sativa Japonica Group fgenesh1_pg.C_Chr_10.0001000167 Ostreococcus tauri estExt_Genewise1.C_1180070 Physcomitrella patens subsp. patens 29848.m004547 Ricinus communis estExt_thaps1_ua_kg.C_chr_100076 Thalassiosira pseudonana CCMP1335 XP_002953416 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR19879 2.0E-237 1 665 No hit NA SUPERFAMILY SSF160897 2.1E-48 55 195 No hit NA Pfam PF04494 2.7E-48 57 191 IPR007582 TFIID subunit, WD40-associated region SMART SM00320 0.0 341 380 IPR001680 WD40 repeat SUPERFAMILY SSF50978 3.0E-80 341 663 IPR017986 WD40-repeat-containing domain ProSiteProfiles PS50082 8.9 348 381 IPR001680 WD40 repeat ProSiteProfiles PS50294 60.0 348 623 IPR017986 WD40-repeat-containing domain Pfam PF00400 0.0 350 380 IPR001680 WD40 repeat ProSitePatterns PS00678 NA 367 381 IPR019775 WD40 repeat, conserved site SMART SM00320 2.6E-7 406 446 IPR001680 WD40 repeat Pfam PF00400 2.4E-9 414 446 IPR001680 WD40 repeat ProSiteProfiles PS50082 14.4 414 446 IPR001680 WD40 repeat PRINTS PR00320 1.1E-8 433 447 IPR020472 G-protein beta WD-40 repeat SMART SM00320 3.6E-8 449 488 IPR001680 WD40 repeat Pfam PF00400 3.0E-10 456 488 IPR001680 WD40 repeat ProSiteProfiles PS50082 12.4 456 497 IPR001680 WD40 repeat SMART SM00320 5.8E-11 491 530 IPR001680 WD40 repeat Pfam PF00400 8.1E-13 493 530 IPR001680 WD40 repeat ProSiteProfiles PS50082 18.0 498 539 IPR001680 WD40 repeat PRINTS PR00320 1.1E-8 517 531 IPR020472 G-protein beta WD-40 repeat ProSitePatterns PS00678 NA 517 531 IPR019775 WD40 repeat, conserved site SMART SM00320 1.6E-11 533 572 IPR001680 WD40 repeat Pfam PF00400 7.2E-11 534 572 IPR001680 WD40 repeat ProSiteProfiles PS50082 16.8 540 581 IPR001680 WD40 repeat ProSitePatterns PS00678 NA 559 573 IPR019775 WD40 repeat, conserved site SMART SM00320 7.9E-11 575 614 IPR001680 WD40 repeat Pfam PF00400 8.3E-11 577 614 IPR001680 WD40 repeat ProSiteProfiles PS50082 16.3 582 623 IPR001680 WD40 repeat PRINTS PR00320 1.1E-8 601 615 IPR020472 G-protein beta WD-40 repeat ProSitePatterns PS00678 NA 601 615 IPR019775 WD40 repeat, conserved site