Basic information
Locus name	AT5G09900
Alias	RPN5A
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Protein degradation/modification
Effect for Senescence	delay
Gene Description	Encodes one of two isoforms for the 26S proteasome regulatory protein (RN) subunit RPN5
Evidence	Genetic evidence:Transgene [Ref 1]
References	1: Book AJ, Smalle J, Lee KH, Yang P, Walker JM, Casper S, Holmes JH, Russo LA, Buzzinotti ZW, Jenik PD, Vierstra RD The RPN5 subunit of the 26s proteasome is essential for gametogenesis, sporophyte development, and complex assembly in Arabidopsis. Plant Cell 2009 Feb;21(2):460-78
Gene Ontology	molecular function protein binding
Sequence	AT5G09900.1 | Genomic | mRNA | CDS | Protein AT5G09900.2 | Genomic | mRNA | CDS | Protein AT5G09900.3 | Genomic | mRNA | CDS | Protein
Mutant information
Mutant name	35S:RPN5a
Mutant/Transgenic	transgenic
Ecotype	Col-0
Mutagenesis type	Transgene
Ortholog Group
Ortholog Groups: OG5_127889	Accession Taxon NP_001032142 Arabidopsis thaliana NP_001119202 ( AT5G09900 ) Arabidopsis thaliana NP_196552 Arabidopsis thaliana NP_568994 Arabidopsis thaliana NP_974758 Arabidopsis thaliana CMG093C Cyanidioschyzon merolae strain 10D 172949 Chlamydomonas reinhardtii ACO64067 Micromonas sp. RCC299 NP_001051914 Oryza sativa Japonica Group estExt_genewise1.C_Chr_16.00010103 Ostreococcus tauri estExt_fgenesh1_pg.C_2570057 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_580187 Physcomitrella patens subsp. patens 27965.m000109 Ricinus communis e_gw1.18.53.1 Thalassiosira pseudonana CCMP1335 XP_002952318 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR10855 1.8E-213 1 441 No hit NA PANTHER PTHR10855 4.7E-214 1 441 No hit NA Coils Coil NA 7 28 No hit NA Coils Coil NA 7 28 No hit NA Pfam PF01399 1.1E-19 291 399 IPR000717 Proteasome component (PCI) domain Pfam PF01399 1.1E-19 291 399 IPR000717 Proteasome component (PCI) domain SMART SM00088 9.1E-13 332 418 IPR000717 Proteasome component (PCI) domain SMART SM00088 9.1E-13 332 418 IPR000717 Proteasome component (PCI) domain SUPERFAMILY SSF46785 3.0E-17 334 407 No hit NA SUPERFAMILY SSF46785 3.0E-17 334 407 No hit NA
Subcellular Localization
Localization 1 Localization cytosol Evidence SUBAcon Pubmed ID 23180787
Localization 2 Localization cytosol,nucleus Evidence SUBAcon Pubmed ID 23180787
Localization 3 Localization nucleus Evidence SUBAcon Pubmed ID 23180787