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About
Basic information   
Locus name AT4G16520
AliasATG8F
OrganismArabidopsis thaliana
Taxonomic identifier[NCBI]
Function categoryNutrient recycling:Autophagy
Effect for Senescencedelay
Gene Descriptionautophagy 8f (ATG8F); the cellular processes involving the Atg8 genes function efficiently in young, non-senescing tissues, both under favourable growth conditions and under starvation stresses.
EvidenceMolecular and physioogic evidence:GUS staining [Ref 1]
References
1: Slavikova S, Shy G, Yao Y, Glozman R, Levanony H, Pietrokovski S, Elazar Z, Galili G
The autophagy-associated Atg8 gene family operates both under favourable growth conditions and under starvation stresses in Arabidopsis plants.
J. Exp. Bot. 2005 Nov;56(421):2839-49

SequenceAT4G16520.1 | Genomic | mRNA | CDS | Protein
AT4G16520.2 | Genomic | mRNA | CDS | Protein
miRNA Interaction      
Details
target: AT4G16520.1 
miRNA: ath-miR1886
miRNA: ath-miR1886
mfe: -26.4 kcal/mol 
p-value: 0.001518 

position:  513 
target 5' U             C     U 3' 
           AUUUCAUUUUACU CUCUC  
           UAAAGUAGAGUGA GAGAG  
miRNA  3' C             A     U 5' 
target: AT4G16520.2 
miRNA: ath-miR1886
miRNA: ath-miR1886
mfe: -26.4 kcal/mol 
p-value: 0.002202 

position:  714 
target 5' U             C     U 3' 
           AUUUCAUUUUACU CUCUC  
           UAAAGUAGAGUGA GAGAG  
miRNA  3' C             A     U 5' 
Ortholog Group      
Ortholog Groups: OG5_126969
AccessionTaxon
NP_001078424Arabidopsis thaliana
NP_001154497Arabidopsis thaliana
NP_176395Arabidopsis thaliana
NP_178631Arabidopsis thaliana
NP_182042Arabidopsis thaliana
NP_191623Arabidopsis thaliana
NP_192371Arabidopsis thaliana
NP_567504Arabidopsis thaliana
NP_567642Arabidopsis thaliana
NP_849298Arabidopsis thaliana
NP_849395 ( AT4G16520 ) Arabidopsis thaliana
NP_850431Arabidopsis thaliana
59275Chlamydomonas reinhardtii
ACO68142Micromonas sp. RCC299
NP_001053929Oryza sativa Japonica Group
NP_001059767Oryza sativa Japonica Group
NP_001061171Oryza sativa Japonica Group
estExt_genewise1.C_Chr_01.00010658Ostreococcus tauri
estExt_Genewise1.C_2490044Physcomitrella patens subsp. patens
estExt_Genewise1.C_260093Physcomitrella patens subsp. patens
estExt_fgenesh1_pg.C_2090070Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_2090080Physcomitrella patens subsp. patens
gw1.209.48.1Physcomitrella patens subsp. patens
29636.m000773Ricinus communis
29842.m003584Ricinus communis
30064.m000481Ricinus communis
30064.m000482Ricinus communis
30174.m008829Ricinus communis
e_gw1.2.784.1Thalassiosira pseudonana CCMP1335
XP_002952089Volvox carteri f. nagariensis
Cross Link      
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PANTHERPTHR109691.3E-781117IPR004241Autophagy protein Atg8 ubiquitin-like
SUPERFAMILYSSF542361.9E-443117No hitNA
PfamPF029912.7E-5014117IPR004241Autophagy protein Atg8 ubiquitin-like
Subcellular Localization   
Localizationcytosol
EvidenceSUBAcon
Pubmed ID23180787