Basic information
Locus name	AT1G03330
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	small nuclear ribonucleoprotein D, putative / snRNP core SM-like protein, putative / U6 snRNA-associated Sm-like protein, putative. Gene expression is increased during leaf senescence.
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process mRNA processing
Sequence	AT1G03330.1 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_128865	Accession Taxon NP_563682 ( AT1G03330 ) Arabidopsis thaliana CMB130C Cyanidioschyzon merolae strain 10D 188349 Chlamydomonas reinhardtii NP_001061016 Oryza sativa Japonica Group e_gw1.01.00.694.1 Ostreococcus tauri estExt_gwp_gw1.C_3360028 Physcomitrella patens subsp. patens e_gw1.2.824.1 Thalassiosira pseudonana CCMP1335
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR13829 1.6E-65 1 91 IPR016654 U6 snRNA-associated Sm-like protein LSm2 PIRSF PIRSF016394 7.1E-54 1 93 IPR016654 U6 snRNA-associated Sm-like protein LSm2 SUPERFAMILY SSF50182 2.8E-23 3 92 IPR010920 Like-Sm (LSM) domain SMART SM00651 1.2E-17 5 72 IPR006649 Ribonucleoprotein LSM domain, eukaryotic/archaea-type Pfam PF01423 6.2E-15 7 72 IPR001163 Ribonucleoprotein LSM domain
Subcellular Localization
Localization	cytosol
Evidence	SUBAcon
Pubmed ID	23180787