Basic information
Locus name	LOC_Os12g41250
Alias	MCCA
Organism	Rice (Oryza sativa)
Taxonomic identifier	[NCBI]
Function category	Lipid/Carbohydrate metabolism:metabolic process
Effect for Senescence	unclear
Gene Description	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial
Evidence	Genetic evidence:Transgene [Ref 1]
References	1: Lee RH, Wang CH, Huang LT, Chen SC Leaf senescence in rice plants: cloning and characterization of senescence up-regulated genes. J. Exp. Bot. 2001 May;52(358):1117-21
Gene Ontology	biological process metabolic process molecular function ATP binding catalytic activity ligase activity
Sequence	LOC_Os12g41250.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: LOC_Os12g41250  miRNA: osa-miR1859 miRNA: osa-miR1859 mfe: -26.3 kcal/mol  p-value: 0.017972  position:  1904  target 5' C    U         A  U   U 3'             UGGA UGGAUGUCA AG AGA              ACCU ACCUGCAGU UC UUU   miRNA  3' A    U         A  C     5'  target: LOC_Os12g41250  miRNA: osa-miR419 miRNA: osa-miR419 mfe: -24.8 kcal/mol  p-value: 0.036448  position:  1386  target 5' A    C         G     U 3'             GAUA UGUCAGCAU CAUUA              UUGU GCAGUCGUA GUAGU   miRNA  3' G    A         A       5'
Ortholog Group
Ortholog Groups: OG5_126626	Accession Taxon NP_001031968 Arabidopsis thaliana NP_198386 Arabidopsis thaliana NP_563674 Arabidopsis thaliana NP_849583 Arabidopsis thaliana CMS299C Cyanidioschyzon merolae strain 10D 112730 Chlamydomonas reinhardtii 122970 Chlamydomonas reinhardtii 133000 Chlamydomonas reinhardtii 193008 Chlamydomonas reinhardtii ACO64605 Micromonas sp. RCC299 NP_001067226 ( LOC_Os12g41250 ) Oryza sativa Japonica Group fgenesh1_pm.C_Chr_08.0001000012 Ostreococcus tauri e_gw1.18.36.1 Physcomitrella patens subsp. patens e_gw1.8.45.1 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_190151 Physcomitrella patens subsp. patens fgenesh1_pg.scaffold_8000087 Physcomitrella patens subsp. patens 29703.m001477 Ricinus communis 30185.m000954 Ricinus communis estExt_thaps1_ua_kg.C_chr_170041 Thalassiosira pseudonana CCMP1335 fgenesh1_pg.C_chr_19a_19000018 Thalassiosira pseudonana CCMP1335 fgenesh1_pg.C_chr_19a_19000019 Thalassiosira pseudonana CCMP1335 thaps1_ua_kg.chr_9000008 Thalassiosira pseudonana CCMP1335 XP_002946091 Volvox carteri f. nagariensis XP_002957277 Volvox carteri f. nagariensis XP_002957311 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR18866 0.0 1 737 No hit NA SUPERFAMILY SSF52440 1.3E-49 34 150 IPR016185 Pre-ATP-grasp domain ProSiteProfiles PS50979 55.2 38 485 IPR011764 Biotin carboxylation domain Pfam PF00289 7.8E-42 39 147 IPR005481 Carbamoyl-phosphate synthase, large subunit, N-terminal SUPERFAMILY SSF56059 5.3E-66 120 382 No hit NA Pfam PF02786 3.3E-76 152 360 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain ProSiteProfiles PS50975 48.7 157 355 IPR011761 ATP-grasp fold ProSitePatterns PS00866 NA 190 204 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain ProSitePatterns PS00867 NA 324 331 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain SUPERFAMILY SSF51246 1.8E-36 369 485 IPR011054 Rudiment single hybrid motif Pfam PF02785 8.6E-35 374 481 IPR005482 Biotin carboxylase, C-terminal SMART SM00878 8.3E-50 374 481 IPR005482 Biotin carboxylase, C-terminal SUPERFAMILY SSF51230 2.1E-18 655 731 IPR011053 Single hybrid motif ProSiteProfiles PS50968 12.8 664 731 IPR000089 Biotin/lipoyl attachment Pfam PF00364 3.0E-14 666 730 IPR000089 Biotin/lipoyl attachment ProSitePatterns PS00188 NA 688 705 IPR001882 Biotin-binding site