Basic information
Locus name	AT1G04970
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Lipid/Carbohydrate metabolism
Effect for Senescence	unclear
Gene Description	lipid-binding serum glycoprotein family protein; FUNCTIONS IN: lipid binding. Gene expression is increased during leaf senescence.
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	molecular function lipid binding
Sequence	AT1G04970.1 | Genomic | mRNA | CDS | Protein AT1G04970.2 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: AT1G04970.1  miRNA: ath-miR5652 miRNA: ath-miR5652 mfe: -30.7 kcal/mol  p-value: 0.000377  position: 116  target 5' A  A                   U  3'             GC CCGAUUCAUUCACAU CGG                 CG GGCUAAGUAAGUGUA GUU      miRNA  3'                    A      5'
Ortholog Group
Ortholog Groups: OG5_132959	Accession Taxon NP_188662 Arabidopsis thaliana NP_563724 ( AT1G04970 ) Arabidopsis thaliana NP_849593 Arabidopsis thaliana NP_851006 Arabidopsis thaliana NP_001057479 Oryza sativa Japonica Group estExt_Genewise1.C_490113 Physcomitrella patens subsp. patens estExt_Genewise1.C_730014 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_1840018 Physcomitrella patens subsp. patens 29620.m000539 Ricinus communis 29640.m000418 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR10504 1.2E-286 30 488 No hit NA SUPERFAMILY SSF55394 8.1E-42 31 241 IPR017943 Bactericidal permeability-increasing protein, alpha/beta domain SMART SM00328 0.0 33 258 IPR017942 Lipid-binding serum glycoprotein, N-terminal Pfam PF01273 1.3E-29 37 212 IPR017942 Lipid-binding serum glycoprotein, N-terminal SUPERFAMILY SSF55394 1.4E-51 243 478 IPR017943 Bactericidal permeability-increasing protein, alpha/beta domain Pfam PF02886 2.4E-28 276 477 IPR001124 Lipid-binding serum glycoprotein, C-terminal SMART SM00329 4.2E-24 276 474 IPR001124 Lipid-binding serum glycoprotein, C-terminal
Subcellular Localization
Localization 1 Localization cytosol,plasma membrane Evidence SUBAcon Pubmed ID 23180787
Localization 2 Localization vacuole,extracellular Evidence SUBAcon Pubmed ID 23180787