Basic information
Locus name	AT1G05890
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Transcription regulation
Effect for Senescence	unclear
Gene Description	zinc finger protein-related; FUNCTIONS IN: protein binding, zinc ion binding, nucleic acid binding. Gene expression is increased during leaf senescence.
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	molecular function protein binding zinc ion binding
Sequence	AT1G05890.1 | Genomic | mRNA | CDS | Protein AT1G05890.2 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_126891	Accession Taxon NP_172080 ( AT1G05890 ) Arabidopsis thaliana NP_176722 Arabidopsis thaliana NP_179206 Arabidopsis thaliana NP_180709 Arabidopsis thaliana NP_180735 Arabidopsis thaliana NP_180736 Arabidopsis thaliana NP_180737 Arabidopsis thaliana NP_189408 Arabidopsis thaliana NP_189409 Arabidopsis thaliana NP_567966 Arabidopsis thaliana 100959 Chlamydomonas reinhardtii 175924 Chlamydomonas reinhardtii ACO70237 Micromonas sp. RCC299 NP_001049474 Oryza sativa Japonica Group NP_001053174 Oryza sativa Japonica Group NP_001062382 Oryza sativa Japonica Group NP_001063654 Oryza sativa Japonica Group NP_001063915 Oryza sativa Japonica Group NP_001063916 Oryza sativa Japonica Group fgenesh1_pm.C_Chr_11.0001000043 Ostreococcus tauri e_gw1.102.11.1 Physcomitrella patens subsp. patens e_gw1.156.112.1 Physcomitrella patens subsp. patens e_gw1.178.17.1 Physcomitrella patens subsp. patens e_gw1.6.78.1 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_1140002 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_90136 Physcomitrella patens subsp. patens 29851.m002458 Ricinus communis 29896.m000120 Ricinus communis 29929.m004529 Ricinus communis 30170.m013976 Ricinus communis 30170.m013978 Ricinus communis e_gw1.4.220.1 Thalassiosira pseudonana CCMP1335 XP_002945723 Volvox carteri f. nagariensis XP_002949551 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR11685 0.0 94 589 No hit NA SUPERFAMILY SSF57850 6.7E-20 169 255 No hit NA ProSiteProfiles PS50089 9.5 174 220 IPR001841 Zinc finger, RING-type Pfam PF01485 1.5E-15 243 305 IPR002867 Zinc finger, C6HC-type SMART SM00647 1.1E-24 243 305 IPR002867 Zinc finger, C6HC-type SUPERFAMILY SSF57850 4.3E-12 243 312 No hit NA SMART SM00647 0.1 318 379 IPR002867 Zinc finger, C6HC-type Pfam PF01485 4.3E-10 323 369 IPR002867 Zinc finger, C6HC-type SUPERFAMILY SSF57850 6.7E-17 324 372 No hit NA Coils Coil NA 384 412 No hit NA