Basic information
Locus name	AT1G08830
Alias	CSD1
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Redox regulation
Effect for Senescence	unclear
Gene Description	COPPER/ZINC SUPEROXIDE DISMUTASE 1 (CSD1); FUNCTIONS IN: superoxide dismutase activity. Gene expression is increased during leaf senescence.
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process oxidation-reduction process superoxide metabolic process molecular function metal ion binding
Sequence	AT1G08830.1 | Genomic | mRNA | CDS | Protein AT1G08830.2 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_127584	Accession Taxon NP_001077494 ( AT1G08830 ) Arabidopsis thaliana NP_001119245 Arabidopsis thaliana NP_172360 Arabidopsis thaliana NP_197311 Arabidopsis thaliana NP_565666 Arabidopsis thaliana ACO69656 Micromonas sp. RCC299 NP_001049399 Oryza sativa Japonica Group NP_001050118 Oryza sativa Japonica Group NP_001060564 Oryza sativa Japonica Group NP_001062514 Oryza sativa Japonica Group e_gw1.20.00.81.1 Ostreococcus tauri estExt_fgenesh1_pg.C_440157 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_180052 Physcomitrella patens subsp. patens fgenesh1_kg.scaffold_131000001 Physcomitrella patens subsp. patens fgenesh1_pg.scaffold_131000083 Physcomitrella patens subsp. patens 29589.m001265 Ricinus communis 29950.m001121 Ricinus communis 30128.m008673 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR10003 1.3E-77 1 150 IPR024134 Superoxide dismutase (Cu/Zn) / chaperones SUPERFAMILY SSF49329 2.8E-57 5 150 IPR001424 Superoxide dismutase, copper/zinc binding domain Pfam PF00080 2.2E-49 8 148 IPR001424 Superoxide dismutase, copper/zinc binding domain PRINTS PR00068 1.3E-46 43 65 IPR001424 Superoxide dismutase, copper/zinc binding domain ProSitePatterns PS00087 NA 43 53 IPR018152 Superoxide dismutase, copper/zinc, binding site PRINTS PR00068 1.3E-46 79 88 IPR001424 Superoxide dismutase, copper/zinc binding domain PRINTS PR00068 1.3E-46 98 120 IPR001424 Superoxide dismutase, copper/zinc binding domain PRINTS PR00068 1.3E-46 123 149 IPR001424 Superoxide dismutase, copper/zinc binding domain ProSitePatterns PS00332 NA 137 148 IPR018152 Superoxide dismutase, copper/zinc, binding site
Subcellular Localization
Localization	cytosol
Evidence	SUBAcon
Pubmed ID	23180787