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About
Basic information
Locus name
AT1G72520
Alias
LOX4
Organism
Arabidopsis thaliana
Taxonomic identifier
[NCBI]
Function category
Hormone response pathway:JA
Effect for Senescence
promote
Gene Description
Expression is greatly increased in leaves during leaf senescence
Evidence
Molecular evidence:Northern [Ref 1]
References
1: He Y, Fukushige H, Hildebrand DF, Gan S
Evidence supporting a role of jasmonic acid in Arabidopsis leaf senescence.
Plant Physiol. 2002 Mar;128(3):876-84
Gene Ontology
biological process
oxidation-reduction process
molecular function
metal ion binding
oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
Pathway
KEGG
map00591
 (EC 1.13.11.12)
map00592
 (EC 1.13.11.12)
MetaCyc
PWY-5410
Sequence
AT1G72520.1 |
Genomic
|
mRNA
|
CDS
|
Protein
miRNA Interaction
Details
target: AT1G72520.1
miRNA:
ath-miR869
miRNA:
ath-miR869
mfe: -25.1 kcal/mol
p-value: 0.063340
position: 1449
target 5' G A U A 3'
GUCAGC AUCUUGAC CC GA
CAGUUG UAGAGUUG GG CU
miRNA 3' A U U 5'
Ortholog Group
Ortholog Groups:
OG5_127482
Accession
Taxon
NP_175900
Arabidopsis thaliana
NP_176923
Arabidopsis thaliana
NP_177396
( AT1G72520 )
Arabidopsis thaliana
NP_188879
Arabidopsis thaliana
NP_564021
Arabidopsis thaliana
NP_566875
Arabidopsis thaliana
144677
Chlamydomonas reinhardtii
NP_001046180
Oryza sativa Japonica Group
NP_001049158
Oryza sativa Japonica Group
NP_001050990
Oryza sativa Japonica Group
NP_001050993
Oryza sativa Japonica Group
NP_001050995
Oryza sativa Japonica Group
NP_001051212
Oryza sativa Japonica Group
NP_001052913
Oryza sativa Japonica Group
NP_001055143
Oryza sativa Japonica Group
NP_001062199
Oryza sativa Japonica Group
NP_001062200
Oryza sativa Japonica Group
NP_001067011
Oryza sativa Japonica Group
NP_001067015
Oryza sativa Japonica Group
NP_001068135
Oryza sativa Japonica Group
e_gw1.171.1.1
Physcomitrella patens subsp. patens
e_gw1.21.1.1
Physcomitrella patens subsp. patens
e_gw1.434.22.1
Physcomitrella patens subsp. patens
e_gw1.97.30.1
Physcomitrella patens subsp. patens
estExt_Genewise1.C_4190013
Physcomitrella patens subsp. patens
estExt_fgenesh1_pg.C_4190004
Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_2320058
Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_4190009
Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_4190017
Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_700115
Physcomitrella patens subsp. patens
29468.m000030
Ricinus communis
29680.m001710
Ricinus communis
29726.m003891
Ricinus communis
29808.m000898
Ricinus communis
29851.m002422
Ricinus communis
29851.m002424
Ricinus communis
29929.m004699
Ricinus communis
30128.m008781
Ricinus communis
30152.m002449
Ricinus communis
30169.m006387
Ricinus communis
30169.m006389
Ricinus communis
30178.m000859
Ricinus communis
XP_002952279
Volvox carteri f. nagariensis
XP_002952280
Volvox carteri f. nagariensis
XP_002956550
Volvox carteri f. nagariensis
XP_002956551
Volvox carteri f. nagariensis
Cross Link
Database
Entry ID
E-value
Start
End
InterPro ID
Description
SMART
SM00308
7.0E-50
90
229
IPR001024
Lipoxygenase, LH2
SUPERFAMILY
SSF49723
1.6E-47
90
232
IPR008976
Lipase/lipooxygenase, PLAT/LH2
PANTHER
PTHR11771
0.0
104
926
IPR000907
Lipoxygenase
ProSiteProfiles
PS50095
18.4
106
228
IPR001024
Lipoxygenase, LH2
Pfam
PF01477
1.3E-14
141
227
IPR001024
Lipoxygenase, LH2
PRINTS
PR00468
8.5E-64
198
216
IPR001246
Lipoxygenase, plant
PRINTS
PR00468
8.5E-64
224
245
IPR001246
Lipoxygenase, plant
ProSiteProfiles
PS51393
279.3
231
926
IPR013819
Lipoxygenase, C-terminal
SUPERFAMILY
SSF48484
1.8E-259
233
926
IPR013819
Lipoxygenase, C-terminal
Pfam
PF00305
7.8E-255
239
910
IPR013819
Lipoxygenase, C-terminal
PRINTS
PR00468
8.5E-64
263
279
IPR001246
Lipoxygenase, plant
PRINTS
PR00468
8.5E-64
295
314
IPR001246
Lipoxygenase, plant
PRINTS
PR00468
8.5E-64
361
382
IPR001246
Lipoxygenase, plant
PRINTS
PR00468
8.5E-64
409
425
IPR001246
Lipoxygenase, plant
PRINTS
PR00468
8.5E-64
448
467
IPR001246
Lipoxygenase, plant
PRINTS
PR00468
8.5E-64
516
540
IPR001246
Lipoxygenase, plant
PRINTS
PR00087
1.0E-19
562
579
IPR013819
Lipoxygenase, C-terminal
PRINTS
PR00087
1.0E-19
580
597
IPR013819
Lipoxygenase, C-terminal
ProSitePatterns
PS00711
NA
580
594
IPR020833
Lipoxygenase, iron binding site
PRINTS
PR00087
1.0E-19
600
620
IPR013819
Lipoxygenase, C-terminal
ProSitePatterns
PS00081
NA
607
617
IPR020834
Lipoxygenase, conserved site
PRINTS
PR00468
8.5E-64
838
852
IPR001246
Lipoxygenase, plant
Subcellular Localization
Localization
plastid
Evidence
SUBAcon
Pubmed ID
23180787