Basic information
Locus name	AT1G12970
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	leucine-rich repeat family protein.
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	molecular function protein binding
Sequence	AT1G12970.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: AT1G12970.1  miRNA: ath-miR414 miRNA: ath-miR414 mfe: -30.2 kcal/mol  p-value: 0.001162  position: 505  target 5' U   G                  A  3'             UGA CGGUGGUGAUGAAG UGA                 ACU GCUACUACUACUUC ACU      miRNA  3'                    U      5'
Ortholog Group
Ortholog Groups: OG5_169937	Accession Taxon NP_189281 Arabidopsis thaliana NP_563921 ( AT1G12970 ) Arabidopsis thaliana 29792.m000594 Ricinus communis e_gw1.7.306.1 Thalassiosira pseudonana CCMP1335
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR23155 9.5E-119 5 405 No hit NA Coils Coil NA 108 136 No hit NA SUPERFAMILY SSF52058 1.7E-49 160 387 No hit NA SMART SM00364 39.0 183 202 No hit NA SMART SM00369 24.0 183 205 IPR003591 Leucine-rich repeat, typical subtype ProSiteProfiles PS51450 5.7 185 207 IPR001611 Leucine-rich repeat SMART SM00364 14.0 206 225 No hit NA SMART SM00369 0.5 206 228 IPR003591 Leucine-rich repeat, typical subtype Pfam PF13855 4.0E-9 208 265 No hit NA ProSiteProfiles PS51450 8.3 208 229 IPR001611 Leucine-rich repeat PRINTS PR00019 1.9E-5 209 222 No hit NA SMART SM00364 12.0 229 248 No hit NA SMART SM00369 0.8 229 252 IPR003591 Leucine-rich repeat, typical subtype ProSiteProfiles PS51450 6.6 231 252 IPR001611 Leucine-rich repeat SMART SM00364 5.0 252 271 No hit NA SMART SM00369 34.0 253 275 IPR003591 Leucine-rich repeat, typical subtype ProSiteProfiles PS51450 6.6 254 275 IPR001611 Leucine-rich repeat SMART SM00369 170.0 276 297 IPR003591 Leucine-rich repeat, typical subtype ProSiteProfiles PS51450 5.9 278 299 IPR001611 Leucine-rich repeat SMART SM00369 34.0 299 322 IPR003591 Leucine-rich repeat, typical subtype ProSiteProfiles PS51450 5.3 301 323 IPR001611 Leucine-rich repeat SMART SM00364 210.0 322 343 No hit NA ProSiteProfiles PS51450 5.3 324 344 IPR001611 Leucine-rich repeat PRINTS PR00019 1.9E-5 347 360 No hit NA SMART SM00364 4.9 347 366 No hit NA SMART SM00369 1.3E-5 347 370 IPR003591 Leucine-rich repeat, typical subtype Pfam PF12799 1.3E-8 349 384 IPR025875 Leucine rich repeat 4 ProSiteProfiles PS51450 8.9 349 370 IPR001611 Leucine-rich repeat ProSiteProfiles PS51450 5.6 372 393 IPR001611 Leucine-rich repeat