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| Locus name | AT5G13180 |
| Alias | VNI2/ANAC083 |
| Organism | Arabidopsis thaliana |
| Taxonomic identifier | [NCBI] |
| Function category | Transcription regulation (NAC) |
| Effect for Senescence | delay |
| Gene Description | Encodes a NAC domain transcription factor that interacts with VND7 and negatively regulates xylem vessel formation. |
| Evidence | Genetic evidence:Mutant [Ref 1]; Genomic evidence:microarray data [Ref 2] |
| References | 1: Yang SD, Seo PJ, Yoon HK, Park CMThe Arabidopsis NAC transcription factor VNI2 integrates abscisic acid signals into leaf senescence via the COR/RD genes.Plant Cell 2011 Jun;23(6):2155-682: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJComparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.Plant J. 2005 May;42(4):567-85 |
| Gene Ontology | |
| Sequence | AT5G13180.1 | Genomic | mRNA | CDS | Protein
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| Mutated 1 | | Mutant name |
vni2-1 | | Mutant/Transgenic |
mutant | | Ecotype |
Col-0 |
| Mutagenesis type |
T-DNA insertion_knock out |
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| Mutated 2 | | Mutant name |
35S:VNI2 | | Mutant/Transgenic |
transgenic | | Ecotype |
Col-0 |
| Mutagenesis type |
transgene |
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| Mutated 3 | | Mutant name |
vni2/35S:BnNAC5 | | Mutant/Transgenic |
transgenic | | Ecotype |
Col-0 |
| Mutagenesis type |
tansgene |
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| Sampling |
Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ.
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4) |
| Comparation |
Legends:
Col: wild type, indicates the ratio of expression in senescing leaves/green leaves.
NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type.
D/L: ratio of DARK 5d/control.
CD: Cell Death, ratio of starved cell suspension culture/control.
Genes showing at least 3 fold (ratio) up regulation during leaf senescence. |
miRNA Interaction  | |
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| Details | | target: AT5G13180.1
miRNA: ath-miR823
miRNA: ath-miR823
mfe: -25.2 kcal/mol
p-value: 0.012673
position: 994
target 5' U A A U 3'
AUC UG GUGAUUA CCACCCG
UAG AU UACUAGU GGUGGGU
miRNA 3' A A 5'
target: AT5G13180.1
miRNA: ath-miR830
miRNA: ath-miR830
mfe: -24.6 kcal/mol
p-value: 0.003110
position: 247
target 5' U A A G 3'
ACCU GGC AUUUGGAG AAGA
UGGA UUG UAAACCUC UUCU
miRNA 3' U U A 5'
target: AT5G13180.1
miRNA: ath-miR854a
miRNA: ath-miR854a
mfe: -28.5 kcal/mol
p-value: 0.010171
position: 30
target 5' U U 3'
UCUUCCUCUCUGUUUUU UC
AGGAGGAGGGAUAGGAG AG
miRNA 3' G U 5'
target: AT5G13180.1
miRNA: ath-miR854b
miRNA: ath-miR854b
mfe: -28.5 kcal/mol
p-value: 0.011624
position: 30
target 5' U U 3'
UCUUCCUCUCUGUUUUU UC
AGGAGGAGGGAUAGGAG AG
miRNA 3' G U 5'
target: AT5G13180.1
miRNA: ath-miR854c
miRNA: ath-miR854c
mfe: -28.5 kcal/mol
p-value: 0.010132
position: 30
target 5' U U 3'
UCUUCCUCUCUGUUUUU UC
AGGAGGAGGGAUAGGAG AG
miRNA 3' G U 5'
target: AT5G13180.1
miRNA: ath-miR854d
miRNA: ath-miR854d
mfe: -28.5 kcal/mol
p-value: 0.010724
position: 30
target 5' U U 3'
UCUUCCUCUCUGUUUUU UC
AGGAGGAGGGAUAGGAG AG
miRNA 3' G U 5'
target: AT5G13180.1
miRNA: ath-miR854e
miRNA: ath-miR854e
mfe: -28.5 kcal/mol
p-value: 0.011971
position: 30
target 5' U U 3'
UCUUCCUCUCUGUUUUU UC
AGGAGGAGGGAUAGGAG AG
miRNA 3' G U 5'
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| Ortholog Group | |
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| Ortholog Groups: OG5_212763 | |
| Cross Link | |
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