|
|
|
|
| Locus name | LOC_Os05g28630 |
| Organism | Rice (Oryza sativa) | | Taxonomic identifier | [NCBI] | | Function category | Others | | Effect for Senescence | unclear | | Gene Description | Leaf senescence related protein, putative, expressed | | Evidence | Molecular evidence:Homolog analysis [Ref 1] | | References | 1: Ouyang S, Zhu W, Hamilton J, Lin H, Campbell M, Childs K, Thibaud-Nissen F, Malek RL, Lee Y, Zheng L, Orvis J, Haas B, Wortman J, Buell CRThe TIGR Rice Genome Annotation Resource: improvements and new features.Nucleic Acids Res. 2007 Jan;35(Database issue):D883-7 | | Sequence | LOC_Os05g28630.1 | Genomic | mRNA | CDS | Protein
|
miRNA Interaction  | |
| | Details | | target: LOC_Os05g28630.1 miRNA: osa-miR2864.1 miRNA: osa-miR2864.1 mfe: -32.5 kcal/mol p-value: 0.003271
position: 1396 target 5' A U G A 3' UGCAGAGCGAGGGC G GGAA ACGUUUUGUUCCCG C UUUU miRNA 3' U G 5'
target: LOC_Os05g28630.1 miRNA: osa-miR417 miRNA: osa-miR417 mfe: -26.8 kcal/mol p-value: 0.003122
position: 1709 target 5' A U G A 3' UGGAACGAGUUCAU UACG UC ACCUUGUUUAAGUG AUGU AG miRNA 3' A 5'
target: LOC_Os05g28630.1 miRNA: osa-miR5075 miRNA: osa-miR5075 mfe: -45.7 kcal/mol p-value: 0.000058
position: 649 target 5' G C 3' GCGG CGGCGGCGGCGGAGG CGCC GCCGCCGCUGCCUCU miRNA 3' U U 5'
target: LOC_Os05g28630.1 miRNA: osa-miR529a miRNA: osa-miR529a mfe: -32.1 kcal/mol p-value: 0.002253
position: 185 target 5' C A A 3' GGAGGAGGGGGAGG UGCGG CUUCUUCUCUCUCC AUGUC miRNA 3' C 5'
|
|
Cross Link  | |
| |
|