Basic information   
Locus name LOC_Os05g28630
OrganismRice (Oryza sativa)
Taxonomic identifier[NCBI]
Function categoryOthers
Effect for Senescenceunclear
Gene DescriptionLeaf senescence related protein, putative, expressed
EvidenceMolecular evidence:Homolog analysis [Ref 1]
References
1: Ouyang S, Zhu W, Hamilton J, Lin H, Campbell M, Childs K, Thibaud-Nissen F, Malek RL, Lee Y, Zheng L, Orvis J, Haas B, Wortman J, Buell CR
The TIGR Rice Genome Annotation Resource: improvements and new features.
Nucleic Acids Res. 2007 Jan;35(Database issue):D883-7

SequenceLOC_Os05g28630.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction      
Details
target: LOC_Os05g28630.1 
miRNA: osa-miR2864.1
miRNA: osa-miR2864.1
mfe: -32.5 kcal/mol 
p-value: 0.003271 

position: 1396 
target 5' A              U G    A  3' 
           UGCAGAGCGAGGGC G GGAA     
           ACGUUUUGUUCCCG C UUUU     
miRNA  3'                U G       5' 

target: LOC_Os05g28630.1 
miRNA: osa-miR417
miRNA: osa-miR417
mfe: -26.8 kcal/mol 
p-value: 0.003122 

position: 1709 
target 5' A              U    G  A  3' 
           UGGAACGAGUUCAU UACG UC     
           ACCUUGUUUAAGUG AUGU AG     
miRNA  3'                     A     5' 

target: LOC_Os05g28630.1 
miRNA: osa-miR5075
miRNA: osa-miR5075
mfe: -45.7 kcal/mol 
p-value: 0.000058 

position: 649 
target 5' G                    C  3' 
           GCGG CGGCGGCGGCGGAGG     
           CGCC GCCGCCGCUGCCUCU     
miRNA  3'      U               U  5' 

target: LOC_Os05g28630.1 
miRNA: osa-miR529a
miRNA: osa-miR529a
mfe: -32.1 kcal/mol 
p-value: 0.002253 

position: 185 
target 5' C              A     A  3' 
           GGAGGAGGGGGAGG UGCGG     
           CUUCUUCUCUCUCC AUGUC     
miRNA  3'                C        5' 
Cross Link      
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PANTHERPTHR322853.5E-149166487No hitNA
PfamPF144163.0E-22166220IPR025846PMR5 N-terminal domain
PfamPF138396.2E-60221477IPR026057PC-Esterase