Leaf Senescence DataBase

Basic information

Locus name

AT5G67620

Organism

Arabidopsis thaliana

Taxonomic identifier

[NCBI]

Function category

Others

Effect for Senescence

unclear

Gene Description

Unknown protein

Evidence

Genomic evidence:microarray data [Ref 1]

References

1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston
High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation.
Plant Cell 2011 Mar;23(3):873-94

Sequence

AT5G67620.1 | Genomic | mRNA | CDS | Protein

miRNA Interaction

Details


target: AT5G67620.1 miRNA: ath-miR5021 miRNA: ath-miR5021 mfe: -28.9 kcal/mol p-value: 0.000040 position: 37 target 5' A C U 3' UUUUCUUCUUCUUCUU CUC AAAAGAAGAAGAAGAA GAG miRNA 3' U 5'

Ortholog Group

Ortholog Groups: OG5_138758

Accession	Taxon
NP_172523	Arabidopsis thaliana
NP_199820	Arabidopsis thaliana
NP_201095	Arabidopsis thaliana
NP_201563 ( AT5G67620 )	Arabidopsis thaliana
NP_564752	Arabidopsis thaliana
NP_974919	Arabidopsis thaliana
NP_001048083	Oryza sativa Japonica Group
NP_001049287	Oryza sativa Japonica Group
NP_001057243	Oryza sativa Japonica Group
NP_001061819	Oryza sativa Japonica Group
NP_001063061	Oryza sativa Japonica Group
estExt_fgenesh1_pg.C_900132	Physcomitrella patens subsp. patens
fgenesh1_pg.scaffold_124000065	Physcomitrella patens subsp. patens
gw1.128.46.1	Physcomitrella patens subsp. patens
29168.m000385	Ricinus communis
29661.m000934	Ricinus communis
30147.m013999	Ricinus communis

Cross Link

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14009	3.3E-31	1	178	IPR025322	Protein of unknown function DUF4228

Subcellular Localization

Localization 1
	Localization	other cytoplasmic components
	Evidence	Localization with GFP-fusion protein (GFP:cDNA)
	Pubmed ID	10737809