Leaf Senescence DataBase

Basic information

Locus name

AT5G66760

Alias

SDH1-1

Organism

Arabidopsis thaliana

Taxonomic identifier

[NCBI]

Function category

Redox regulation

Effect for Senescence

unclear

Gene Description

SDH1-1; FUNCTIONS IN: succinate dehydrogenase activity, ATP binding

Evidence

Genomic evidence:microarray data [Ref 1]

References

1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston
High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation.
Plant Cell 2011 Mar;23(3):873-94

Gene Ontology

biological process	oxidation-reduction process
molecular function	oxidoreductase activity, acting on the CH-CH group of donors oxidoreductase activity

Sequence

AT5G66760.1 | Genomic | mRNA | CDS | Protein

miRNA Interaction

Details


target: AT5G66760.1 miRNA: ath-miR447c-3p miRNA: ath-miR447c-3p mfe: -33.7 kcal/mol p-value: 0.000525 position: 1096 target 5' G U A 3' CA CAAGAGAUGUUGUCUCCAG GU GUUUUCUACAGCAGGGGUU miRNA 3' U 5'

Ortholog Group

Ortholog Groups: OG5_126927

Accession	Taxon
NP_179435	Arabidopsis thaliana
NP_201477 ( AT5G66760 )	Arabidopsis thaliana
CMT582C	Cyanidioschyzon merolae strain 10D
195972	Chlamydomonas reinhardtii
ACO67124	Micromonas sp. RCC299
NP_001058845	Oryza sativa Japonica Group
e_gw1.14.00.45.1	Ostreococcus tauri
estExt_gwp_gw1.C_2760070	Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_530127	Physcomitrella patens subsp. patens
29651.m000291	Ricinus communis
estExt_gwp_gw1.C_chr_140290	Thalassiosira pseudonana CCMP1335
XP_002949632	Volvox carteri f. nagariensis

Cross Link

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PANTHER	PTHR11632	0.0	36	634	No hit	NA
SUPERFAMILY	SSF51905	5.3E-79	41	302	No hit	NA
TIGRFAM	TIGR01816	3.7E-297	48	634	IPR011281	Succinate dehydrogenase, flavoprotein subunit
Pfam	PF00890	1.4E-123	51	447	IPR003953	FAD binding domain
TIGRFAM	TIGR01812	2.3E-240	51	634	IPR014006	Succinate dehydrogenase/fumarate reductase, flavoprotein subunit
ProSitePatterns	PS00504	NA	85	94	IPR003952	Fumarate reductase/succinate dehydrogenase, FAD-binding site
SUPERFAMILY	SSF56425	7.3E-42	279	397	IPR027477	Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
SUPERFAMILY	SSF51905	5.3E-79	401	470	No hit	NA
SUPERFAMILY	SSF46977	7.6E-48	493	634	IPR015939	Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal
Pfam	PF02910	5.4E-48	502	634	IPR015939	Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal

Subcellular Localization

Localization 1
	Localization	mitochondria
	Evidence	Localization with GFP-fusion protein (GFP:cDNA)
	Pubmed ID	10737809