Leaf Senescence DataBase

Basic information

Locus name

AT5G65750

Organism

Arabidopsis thaliana

Taxonomic identifier

[NCBI]

Function category

Redox regulation

Effect for Senescence

unclear

Gene Description

2-oxoglutarate dehydrogenase E1 component, putative / oxoglutarate decarboxylase, putative / alpha-ketoglutaric dehydrogenase, putative

Evidence

Genomic evidence:microarray data [Ref 1]

References

1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston
High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation.
Plant Cell 2011 Mar;23(3):873-94

Gene Ontology

biological process	oxidation-reduction process tricarboxylic acid cycle
molecular function	oxoglutarate dehydrogenase (succinyl-transferring) activity thiamine pyrophosphate binding

Pathway

KEGG	map00020 (EC 1.2.4.2) map00310 (EC 1.2.4.2) map00380 (EC 1.2.4.2)
MetaCyc	PWY-5084

Sequence

AT5G65750.1 | Genomic | mRNA | CDS | Protein

Ortholog Group

Ortholog Groups: OG5_126779

Accession	Taxon
NP_191101	Arabidopsis thaliana
NP_201376 ( AT5G65750 )	Arabidopsis thaliana
CMF068C	Cyanidioschyzon merolae strain 10D
79471	Chlamydomonas reinhardtii
ACO62963	Micromonas sp. RCC299
ACO64007	Micromonas sp. RCC299
NP_001052638	Oryza sativa Japonica Group
NP_001060747	Oryza sativa Japonica Group
estExt_gwp_GeneWisePlus.C_Chr_03.00010162	Ostreococcus tauri
gw1.16.00.5.1	Ostreococcus tauri
estExt_fgenesh1_pg.C_140076	Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_100197	Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_2700034	Physcomitrella patens subsp. patens
29585.m000604	Ricinus communis
29585.m000607	Ricinus communis
estExt_thaps1_ua_kg.C_chr_130136	Thalassiosira pseudonana CCMP1335
XP_002950899	Volvox carteri f. nagariensis

Cross Link

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PANTHER	PTHR23152	0.0	20	1019	IPR011603	2-oxoglutarate dehydrogenase, E1 component
PIRSF	PIRSF000157	0.0	46	1018	IPR011603	2-oxoglutarate dehydrogenase, E1 component
TIGRFAM	TIGR00239	0.0	116	1014	IPR011603	2-oxoglutarate dehydrogenase, E1 component
SUPERFAMILY	SSF52518	1.0E-88	155	584	No hit	NA
Pfam	PF00676	3.2E-62	246	568	IPR001017	Dehydrogenase, E1 component
SUPERFAMILY	SSF52518	2.6E-48	622	859	No hit	NA
Pfam	PF02779	4.8E-68	638	853	IPR005475	Transketolase-like, pyrimidine-binding domain
SMART	SM00861	1.5E-55	639	852	IPR005475	Transketolase-like, pyrimidine-binding domain

Subcellular Localization

Localization 1
	Localization	mitochondria
	Evidence	Localization with GFP-fusion protein (GFP:cDNA)
	Pubmed ID	10737809