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Locus name | AT5G65210 |
Organism | Arabidopsis thaliana | Taxonomic identifier | [NCBI] | Function category | Transcription regulation | Effect for Senescence | unclear | Gene Description | GA1; FUNCTIONS IN: transcription factor activity, calmodulin binding, DNA binding; INVOLVED IN: defense response to bacterium | Evidence | Genomic evidence:microarray data [Ref 1] | References | 1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-WollastonHigh-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation.Plant Cell 2011 Mar;23(3):873-94 | Gene Ontology | | Sequence | AT5G65210.1 | Genomic | mRNA | CDS | Protein AT5G65210.2 | Genomic | mRNA | CDS | Protein AT5G65210.3 | Genomic | mRNA | CDS | Protein AT5G65210.4 | Genomic | mRNA | CDS | Protein AT5G65210.5 | Genomic | mRNA | CDS | Protein AT5G65210.6 | Genomic | mRNA | CDS | Protein
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| Sampling |
Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4) | Comparation |
Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. D/L: ratio of DARK 5d/control. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence. |
miRNA Interaction | |
| Details | | target: AT5G65210.2 miRNA: ath-miR157a miRNA: ath-miR157a mfe: -24.8 kcal/mol p-value: 0.012557
position: 459 target 5' U A G 3' UGUUCUUUGUUUUC GUUGA ACGAGAGAUAGAAG CAGUU miRNA 3' C A 5'
target: AT5G65210.2 miRNA: ath-miR157b miRNA: ath-miR157b mfe: -24.8 kcal/mol p-value: 0.012463
position: 459 target 5' U A G 3' UGUUCUUUGUUUUC GUUGA ACGAGAGAUAGAAG CAGUU miRNA 3' C A 5'
target: AT5G65210.2 miRNA: ath-miR157c miRNA: ath-miR157c mfe: -24.8 kcal/mol p-value: 0.012497
position: 459 target 5' U A G 3' UGUUCUUUGUUUUC GUUGA ACGAGAGAUAGAAG CAGUU miRNA 3' C A 5'
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Ortholog Group | |
| Ortholog Groups: OG5_160017 | |
Cross Link | |
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Mutant Image | |
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| Localization | nucleus | Evidence | SUBAcon | Pubmed ID | 23180787 |
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