Basic information
GenBank ID	AK103253
Alias	TDC2
Organism	Rice (Oryza sativa)
Taxonomic identifier	[NCBI]
Function category	Protein degradation/modification
Effect for Senescence	unclear
Gene Description	Trp biosynthetic pathway
Evidence	Molecular evidence:Northern [Ref 1]
References	1: Kang K, Kim YS, Park S, Back K Senescence-induced serotonin biosynthesis and its role in delaying senescence in rice leaves. Plant Physiol. 2009 Jul;150(3):1380-93
Gene Ontology	biological process cellular amino acid metabolic process molecular function carboxy-lyase activity
Sequence	AK103253.1 | mRNA | CDS | Protein
miRNA Interaction
Details	target: AK103253.1  miRNA: osa-miR3979-3p miRNA: osa-miR3979-3p mfe: -35.0 kcal/mol  p-value: 0.003091  position: 47  target 5' C                 C  C  3'             GCUUC CUUCUCCCCCG GG                 CGAAG GAGGAGGGGGC UC      miRNA  3'       A           U     5'  target: AK103253.1  miRNA: osa-miR5075 miRNA: osa-miR5075 mfe: -43.5 kcal/mol  p-value: 0.000094  position: 124  target 5' G                 U   G  3'             GCGG CGGCGGCGGCGG GAG                 CGCC GCCGCCGCUGCC CUU      miRNA  3'      U            U      5'
Ortholog Group
Ortholog Groups: OG5_129065	Accession Taxon NP_001078461 Arabidopsis thaliana NP_194597 Arabidopsis thaliana NP_849999 Arabidopsis thaliana 116869 Chlamydomonas reinhardtii NP_001059509 ( AK103253 ) Oryza sativa Japonica Group e_gw1.102.20.1 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_1020023 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_1020027 Physcomitrella patens subsp. patens 29637.m000726 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR11999 9.5E-300 1 493 No hit NA SUPERFAMILY SSF53383 3.9E-139 17 490 IPR015424 Pyridoxal phosphate-dependent transferase PRINTS PR00800 4.1E-80 22 41 IPR010977 Aromatic-L-amino-acid decarboxylase PRINTS PR00800 4.1E-80 45 62 IPR010977 Aromatic-L-amino-acid decarboxylase Pfam PF00282 2.0E-146 51 424 IPR002129 Pyridoxal phosphate-dependent decarboxylase PRINTS PR00800 4.1E-80 63 82 IPR010977 Aromatic-L-amino-acid decarboxylase PRINTS PR00800 4.1E-80 89 108 IPR010977 Aromatic-L-amino-acid decarboxylase PRINTS PR00800 4.1E-80 110 128 IPR010977 Aromatic-L-amino-acid decarboxylase PRINTS PR00800 4.1E-80 129 148 IPR010977 Aromatic-L-amino-acid decarboxylase PRINTS PR00800 4.1E-80 154 174 IPR010977 Aromatic-L-amino-acid decarboxylase ProSitePatterns PS00392 NA 307 328 IPR021115 Pyridoxal-phosphate binding site PRINTS PR00800 4.1E-80 363 378 IPR010977 Aromatic-L-amino-acid decarboxylase PRINTS PR00800 4.1E-80 406 425 IPR010977 Aromatic-L-amino-acid decarboxylase