Leaf Senescence DataBase

Basic information

GenBank ID

NM_001159045

Organism

Maize (Zea mays)

Taxonomic identifier

[NCBI]

Function category

Others

Effect for Senescence

unclear

Gene Description

Senescence associated protein in Zea mays

Evidence

Genomic evidence [Ref 1]

References

1: Alexandrov NN, Brover VV, Freidin S, Troukhan ME, Tatarinova TV, Zhang H, Swaller TJ, Lu YP, Bouck J, Flavell RB, Feldmann KA
Insights into corn genes derived from large-scale cDNA sequencing.
Plant Mol. Biol. 2009 Jan;69(1-2):179-94

Gene Ontology

biological process	fatty acid biosynthetic process lipid biosynthetic process metabolic process
cellular component	membrane
molecular function	catalytic activity transferase activity, transferring acyl groups other than amino-acyl groups

Pathway

KEGG

map00061 (EC 2.3.1.-)
map00253 (EC 2.3.1.-)
map00310 (EC 2.3.1.-)
map00330 (EC 2.3.1.-)
map00340 (EC 2.3.1.-)
map00350 (EC 2.3.1.-)
map00362 (EC 2.3.1.-)
map00540 (EC 2.3.1.-)
map00564 (EC 2.3.1.-)
map00565 (EC 2.3.1.-)
map00604 (EC 2.3.1.-)
map00623 (EC 2.3.1.-)
map00626 (EC 2.3.1.-)
map00627 (EC 2.3.1.-)
map00642 (EC 2.3.1.-)
map00650 (EC 2.3.1.-)
map00903 (EC 2.3.1.-)
map00904 (EC 2.3.1.-)
map00906 (EC 2.3.1.-)
map00942 (EC 2.3.1.-)
map00945 (EC 2.3.1.-)
map00950 (EC 2.3.1.-)
map00960 (EC 2.3.1.-)
map00965 (EC 2.3.1.-)

Sequence

NM_001159045.1 | mRNA | CDS | Protein

miRNA Interaction

Details

target: NM_001159045.1
miRNA: zma-miR399b-5p
miRNA: zma-miR399b-5p
mfe: -36.6 kcal/mol
p-value: 0.001503

position: 1349
target 5' C              U  A    A  3'
           CGUGCUGGAGGAGG GC GCGC
           GUACGGUCUCCUCU CG CGUG
miRNA  3'                   A       5'

target: NM_001159045.1
miRNA: zma-miR399h-5p
miRNA: zma-miR399h-5p
mfe: -35.9 kcal/mol
p-value: 0.001743

position: 1349
target 5' C              U  A    A  3'
           CGUGCUGGAGGAGG GC GCGC
           GCACGGUCUCCUCU UG CGUG
miRNA  3'                   A       5'

Cross Link

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PANTHER	PTHR31561	2.6E-237	1	346	No hit	NA
Pfam	PF08392	2.1E-106	1	215	IPR013601	FAE1/Type III polyketide synthase-like protein
SUPERFAMILY	SSF53901	2.5E-44	13	195	IPR016039	Thiolase-like
SUPERFAMILY	SSF53901	2.5E-44	230	315	IPR016039	Thiolase-like
Pfam	PF08541	1.9E-11	234	314	IPR013747	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal