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| Locus name | AT3G15030 |
| Alias | TCP4 |
| Organism | Arabidopsis thaliana |
| Taxonomic identifier | [NCBI] |
| Function category | Transcription regulation:JA biosynthesis |
| Effect for Senescence | promote |
| Gene Description | Arabidopsis thaliana TCP family transcription factor. Regulated by miR319. |
| Evidence | Genetic evidence:Mutant [Ref 1] |
| References | 1: Schommer C, Palatnik JF, Aggarwal P, Chetelat A, Cubas P, Farmer EE, Nath U, Weigel DControl of jasmonate biosynthesis and senescence by miR319 targets.PLoS Biol. 2008 Sep 23;6(9):e230 |
| Sequence | AT3G15030.1 | Genomic | mRNA | CDS | Protein
AT3G15030.2 | Genomic | mRNA | CDS | Protein
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| Mutated 1 | | Mutant name |
tcp2tcp4 | | Mutant/Transgenic |
mutant | | Ecotype |
Col-0 |
| Mutagenesis type |
T-DNA insertion_knock out |
|
| Mutated 2 | | Mutant name |
tcp2tcp4tcp10 | | Mutant/Transgenic |
mutant | | Ecotype |
Col-0 |
| Mutagenesis type |
T-DNA insertion_knock out |
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miRNA Interaction  | |
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| Details | | target: AT3G15030.1
miRNA: ath-miR159a
miRNA: ath-miR159a
mfe: -33.4 kcal/mol
p-value: 0.002002
position: 1283
target 5' A C U 3'
GGGGU CCCUUCAGUCCAG
UCUCG GGGAAGUUAGGUU
miRNA 3' A A U 5'
target: AT3G15030.1
miRNA: ath-miR159b
miRNA: ath-miR159b
mfe: -33.4 kcal/mol
p-value: 0.001830
position: 1282
target 5' G C U 3'
AGGGGU CCCUUCAGUCCAG
UUCUCG GGGAAGUUAGGUU
miRNA 3' A U 5'
target: AT3G15030.1
miRNA: ath-miR159c
miRNA: ath-miR159c
mfe: -36.1 kcal/mol
p-value: 0.000600
position: 1282
target 5' G C U 3'
AGGGGU CCCUUCAGUCCAG
UCCUCG GGGAAGUUAGGUU
miRNA 3' A U 5'
target: AT3G15030.1
miRNA: ath-miR319a
miRNA: ath-miR319a
mfe: -37.6 kcal/mol
p-value: 0.000517
position: 1280
target 5' C A C U 3'
AG GGGGU CCCUUCAGUCCAG
UC CCUCG GGGAAGUCAGGUU
miRNA 3' A 5'
target: AT3G15030.1
miRNA: ath-miR319b
miRNA: ath-miR319b
mfe: -37.6 kcal/mol
p-value: 0.001308
position: 1280
target 5' C A C U 3'
AG GGGGU CCCUUCAGUCCAG
UC CCUCG GGGAAGUCAGGUU
miRNA 3' A 5'
target: AT3G15030.1
miRNA: ath-miR319c
miRNA: ath-miR319c
mfe: -39.4 kcal/mol
p-value: 0.000241
position: 1281
target 5' A C U 3'
GAGGGGU CCCUUCAGUCCAG
UUCCUCG GGGAAGUCAGGUU
miRNA 3' A 5'
target: AT3G15030.1
miRNA: ath-miR865-5p
miRNA: ath-miR865-5p
mfe: -24.0 kcal/mol
p-value: 0.010327
position: 808
target 5' G A 3'
UCAA UGGAUUCAGAUUCG
AGUU AUCUAGGUUUAAGU
miRNA 3' G A A 5'
target: AT3G15030.2
miRNA: ath-miR159a
miRNA: ath-miR159a
mfe: -33.4 kcal/mol
p-value: 0.001896
position: 1283
target 5' A C U 3'
GGGGU CCCUUCAGUCCAG
UCUCG GGGAAGUUAGGUU
miRNA 3' A A U 5'
target: AT3G15030.2
miRNA: ath-miR159b
miRNA: ath-miR159b
mfe: -33.4 kcal/mol
p-value: 0.001727
position: 1282
target 5' G C U 3'
AGGGGU CCCUUCAGUCCAG
UUCUCG GGGAAGUUAGGUU
miRNA 3' A U 5'
target: AT3G15030.2
miRNA: ath-miR159c
miRNA: ath-miR159c
mfe: -36.1 kcal/mol
p-value: 0.000563
position: 1282
target 5' G C U 3'
AGGGGU CCCUUCAGUCCAG
UCCUCG GGGAAGUUAGGUU
miRNA 3' A U 5'
target: AT3G15030.2
miRNA: ath-miR319a
miRNA: ath-miR319a
mfe: -37.6 kcal/mol
p-value: 0.000484
position: 1280
target 5' C A C U 3'
AG GGGGU CCCUUCAGUCCAG
UC CCUCG GGGAAGUCAGGUU
miRNA 3' A 5'
target: AT3G15030.2
miRNA: ath-miR319b
miRNA: ath-miR319b
mfe: -37.6 kcal/mol
p-value: 0.001242
position: 1280
target 5' C A C U 3'
AG GGGGU CCCUUCAGUCCAG
UC CCUCG GGGAAGUCAGGUU
miRNA 3' A 5'
target: AT3G15030.2
miRNA: ath-miR319c
miRNA: ath-miR319c
mfe: -39.4 kcal/mol
p-value: 0.000225
position: 1281
target 5' A C U 3'
GAGGGGU CCCUUCAGUCCAG
UUCCUCG GGGAAGUCAGGUU
miRNA 3' A 5'
target: AT3G15030.2
miRNA: ath-miR865-5p
miRNA: ath-miR865-5p
mfe: -24.0 kcal/mol
p-value: 0.009748
position: 808
target 5' G A 3'
UCAA UGGAUUCAGAUUCG
AGUU AUCUAGGUUUAAGU
miRNA 3' G A A 5'
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| Ortholog Group | |
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| Ortholog Groups: OG5_170521 | |
| Cross Link | |
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| Localization | nucleus |
| Evidence | SUBAcon |
| Pubmed ID | 23180787 |
