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| Locus name | AT2G31070 |
| Alias | TCP10 |
| Organism | Arabidopsis thaliana |
| Taxonomic identifier | [NCBI] |
| Function category | Transcription regulation:JA biosynthesis |
| Effect for Senescence | promote |
| Gene Description | Arabidopsis thaliana TCP family transcription factor. Regulated by miR319. |
| Evidence | Genetic evidence:Mutant [Ref 1] |
| References | 1: Schommer C, Palatnik JF, Aggarwal P, Chetelat A, Cubas P, Farmer EE, Nath U, Weigel DControl of jasmonate biosynthesis and senescence by miR319 targets.PLoS Biol. 2008 Sep 23;6(9):e230 |
| Sequence | AT2G31070.1 | Genomic | mRNA | CDS | Protein
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| Mutant name |
tcp2tcp4tcp10 |
| Mutant/Transgenic |
mutant |
| Ecotype |
Col-0 |
| Mutagenesis type |
T-DNA insertion_knock out |
miRNA Interaction  | |
|
| Details | | target: AT2G31070.1
miRNA: ath-miR159a
miRNA: ath-miR159a
mfe: -33.4 kcal/mol
p-value: 0.002005
position: 1381
target 5' A A U 3'
GGGGU CCCUUCAGUCCAG
UCUCG GGGAAGUUAGGUU
miRNA 3' A A U 5'
target: AT2G31070.1
miRNA: ath-miR159b
miRNA: ath-miR159b
mfe: -33.3 kcal/mol
p-value: 0.001910
position: 1380
target 5' A A U 3'
AGGGGU CCCUUCAGUCCAG
UUCUCG GGGAAGUUAGGUU
miRNA 3' A U 5'
target: AT2G31070.1
miRNA: ath-miR159c
miRNA: ath-miR159c
mfe: -36.0 kcal/mol
p-value: 0.000628
position: 1380
target 5' A A U 3'
AGGGGU CCCUUCAGUCCAG
UCCUCG GGGAAGUUAGGUU
miRNA 3' A U 5'
target: AT2G31070.1
miRNA: ath-miR319a
miRNA: ath-miR319a
mfe: -37.3 kcal/mol
p-value: 0.000586
position: 1380
target 5' A A U 3'
AGGG GU CCCUUCAGUCCAG
UCCC CG GGGAAGUCAGGUU
miRNA 3' U A 5'
target: AT2G31070.1
miRNA: ath-miR319b
miRNA: ath-miR319b
mfe: -37.3 kcal/mol
p-value: 0.001446
position: 1380
target 5' A A U 3'
AGGG GU CCCUUCAGUCCAG
UCCC CG GGGAAGUCAGGUU
miRNA 3' U A 5'
target: AT2G31070.1
miRNA: ath-miR319c
miRNA: ath-miR319c
mfe: -39.0 kcal/mol
p-value: 0.000284
position: 1379
target 5' A A U 3'
AAGGGGU CCCUUCAGUCCAG
UUCCUCG GGGAAGUCAGGUU
miRNA 3' A 5'
target: AT2G31070.1
miRNA: ath-miR826
miRNA: ath-miR826
mfe: -25.0 kcal/mol
p-value: 0.058411
position: 711
target 5' C A G G 3'
UACG UGU CAAGACCGG UUA
GUGC AUA GUUUUGGCC GAU
miRNA 3' G U 5'
target: AT2G31070.1
miRNA: ath-miR847
miRNA: ath-miR847
mfe: -27.6 kcal/mol
p-value: 0.013446
position: 560
target 5' G G G A U 3'
CGUC GAGAA GAGGAGGAG GA
GUAG UUCUU CUUCUCCUC CU
miRNA 3' A 5'
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| Cross Link | |
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| Localization | nucleus |
| Evidence | SUBAcon |
| Pubmed ID | 23180787 |
