Basic information
Locus name	AT1G13950
Alias	ELF5A-1
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others (translation)
Effect for Senescence	unclear
Gene Description	EUKARYOTIC ELONGATION FACTOR 5A-1 (ELF5A-1); FUNCTIONS IN: translation initiation factor activity
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process peptidyl-lysine modification to hypusine positive regulation of translational elongation positive regulation of translational termination molecular function RNA binding ribosome binding translation elongation factor activity
Sequence	AT1G13950.1 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_126922	Accession Taxon NP_001077597 Arabidopsis thaliana NP_172848 ( AT1G13950 ) Arabidopsis thaliana NP_173985 Arabidopsis thaliana NP_177100 Arabidopsis thaliana CMS351C Cyanidioschyzon merolae strain 10D 126557 Chlamydomonas reinhardtii NP_113252 Guillardia theta ACO68730 Micromonas sp. RCC299 NP_001051336 Oryza sativa Japonica Group NP_001058746 Oryza sativa Japonica Group NP_001060174 Oryza sativa Japonica Group NP_001066843 Oryza sativa Japonica Group e_gw1.01.00.594.1 Ostreococcus tauri fgenesh1_pg.scaffold_158000101 Physcomitrella patens subsp. patens 29687.m000560 Ricinus communis 30138.m004031 Ricinus communis 30174.m009164 Ricinus communis estExt_gwp_gw1.C_chr_30716 Thalassiosira pseudonana CCMP1335 XP_002950537 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PIRSF PIRSF003025 2.2E-98 1 157 IPR001884 Translation elongation factor IF5A PANTHER PTHR11673 1.3E-103 2 158 IPR001884 Translation elongation factor IF5A SUPERFAMILY SSF50104 1.0E-27 14 92 IPR008991 Translation protein SH3-like domain TIGRFAM TIGR00037 2.8E-42 16 152 IPR001884 Translation elongation factor IF5A Pfam PF00467 4.8E-5 28 48 IPR005824 KOW ProSitePatterns PS00302 NA 49 56 IPR019769 Translation elongation factor, IF5A, hypusine site Pfam PF01287 3.7E-30 84 153 IPR020189 Translation elongation factor, IF5A C-terminal SUPERFAMILY SSF50249 1.5E-25 85 155 IPR012340 Nucleic acid-binding, OB-fold