Basic information
Locus name	AT1G13960
Alias	WRKY4
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Transcription regulation:WRKY
Effect for Senescence	unclear
Gene Description	Encodes WRKY DNA-binding protein 4 (WRKY4).
Evidence	Molecular evidence:Northern [Ref 1]; Genomic evidence:microarray data [Ref 2]
References	1: Robatzek S, Somssich IE A new member of the Arabidopsis WRKY transcription factor family, AtWRKY6, is associated with both senescence- and defence-related processes. Plant J. 2001 Oct;28(2):123-33 2: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85
Gene Ontology	biological process regulation of transcription, DNA-dependent molecular function sequence-specific DNA binding transcription factor activity sequence-specific DNA binding
Sequence	AT1G13960.1 | Genomic | mRNA | CDS | Protein AT1G13960.2 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. D/L: ratio of DARK 5d/control. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
Ortholog Group
Ortholog Groups: OG5_170301	Accession Taxon NP_172849 ( AT1G13960 ) Arabidopsis thaliana NP_178433 Arabidopsis thaliana NP_849658 Arabidopsis thaliana NP_001066844 Oryza sativa Japonica Group 30174.m009166 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR31221 7.0E-112 222 502 No hit NA SUPERFAMILY SSF118290 2.6E-26 227 287 IPR003657 DNA-binding WRKY SMART SM00774 6.6E-39 228 286 IPR003657 DNA-binding WRKY Pfam PF03106 7.0E-32 229 285 IPR003657 DNA-binding WRKY ProSiteProfiles PS50811 24.9 229 287 IPR003657 DNA-binding WRKY SUPERFAMILY SSF118290 1.4E-29 400 468 IPR003657 DNA-binding WRKY ProSiteProfiles PS50811 38.0 403 468 IPR003657 DNA-binding WRKY Pfam PF03106 4.8E-31 408 466 IPR003657 DNA-binding WRKY SMART SM00774 3.8E-39 408 467 IPR003657 DNA-binding WRKY
Mutant Image
wrky4 mutant exhibited slightly delay senescence.
Subcellular Localization
Localization	nucleus
Evidence	SUBAcon
Pubmed ID	23180787