Basic information
Locus name	AT1G15310
Alias	ATHSRP54A
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Signal transduction
Effect for Senescence	unclear
Gene Description	ARABIDOPSIS THALIANA SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT (ATHSRP54A)
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process SRP-dependent cotranslational protein targeting to membrane cellular component signal recognition particle molecular function GTP binding GTPase activity
Pathway	Reactome REACT_15380
Sequence	AT1G15310.1 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_126863	Accession Taxon NP_001077690 Arabidopsis thaliana NP_196014 Arabidopsis thaliana NP_199761 Arabidopsis thaliana NP_563970 ( AT1G15310 ) Arabidopsis thaliana NP_564535 Arabidopsis thaliana CMC066C Cyanidioschyzon merolae strain 10D CMO152C Cyanidioschyzon merolae strain 10D 127491 Chlamydomonas reinhardtii 81427 Chlamydomonas reinhardtii ACO65617 Micromonas sp. RCC299 ACO68481 Micromonas sp. RCC299 NP_001044395 Oryza sativa Japonica Group NP_001056003 Oryza sativa Japonica Group NP_001065781 Oryza sativa Japonica Group 1000010053 Ostreococcus tauri fgenesh1_pg.C_Chr_01.0001000049 Ostreococcus tauri estExt_Genewise1.C_80099 Physcomitrella patens subsp. patens estExt_fgenesh1_pg.C_260058 Physcomitrella patens subsp. patens 28629.m000555 Ricinus communis 29841.m002885 Ricinus communis estExt_thaps1_ua_kg.C_chr_20210 Thalassiosira pseudonana CCMP1335 thaps1_ua_kg.chr_1000065 Thalassiosira pseudonana CCMP1335 XP_002949270 Volvox carteri f. nagariensis XP_002957143 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR11564 1.1E-270 1 436 No hit NA SUPERFAMILY SSF47364 1.8E-18 1 92 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle SMART SM00963 2.3E-9 2 87 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle TIGRFAM TIGR01425 4.6E-208 2 426 IPR006325 Signal recognition particle, SRP54 subunit, eukaryotic Hamap MF_00306 34.1 6 458 IPR022941 Signal recognition particle, SRP54 subunit Pfam PF02881 4.2E-12 6 83 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle SUPERFAMILY SSF52540 2.4E-49 97 297 IPR027417 P-loop containing nucleoside triphosphate hydrolase SMART SM00382 6.6E-5 100 277 IPR003593 AAA+ ATPase domain Pfam PF00448 3.4E-76 101 296 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain SMART SM00962 6.9E-95 101 296 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain ProSitePatterns PS00300 NA 269 282 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain SUPERFAMILY SSF47446 3.0E-31 298 431 IPR004125 Signal recognition particle, SRP54 subunit, M-domain Pfam PF02978 1.9E-22 327 428 IPR004125 Signal recognition particle, SRP54 subunit, M-domain
Subcellular Localization
Localization	cytosol
Evidence	SUBAcon
Pubmed ID	23180787